Validation Results for CQDG_FHIR_IG

Generated Wed Dec 18 18:28:36 UTC 2024, FHIR version 4.0.1 for fhir.cqdg#0.1.0 (canonical = https://fhir.cqdg.ca (history)). See Errors Only

Quality Checks
Publisher Version:IG Publisher Version: v1.8.3
Publication Code:n/a . PackageId = fhir.cqdg, Canonical = https://fhir.cqdg.ca
Realm Check for n/a:
  • n/a
Language Info:This IG has no language information
Publication Request:
  • This IG has never been published
  • No publication request found
Supressed Messages:3 Suppressed Issues
Dependency Checks:
PackageVersionFHIRCanonicalWeb BaseComment
.. fhir.cqdg0.1.0R4https://fhir.cqdg.ca
... hl7.terminology.r46.1.0 MR4http://terminology.hl7.orghttp://terminology.hl7.org/6.1.0
... hl7.fhir.uv.extensions.r45.1.0 MR4http://hl7.org/fhir/extensionshttp://hl7.org/fhir/extensions/5.1.0
... hl7.fhir.ca.baseline1.0.2 UR4http://hl7.org/fhir/ca/baseline/ImplementationGuide/hl7.fhir.ca.baselinehttp://hl7.org/fhir/ca/baseline/ImplementationGuide/hl7.fhir.ca.baseline
.... hl7.fhir.uv.ips1.0.0 OR4http://hl7.org/fhir/uv/ipshttp://hl7.org/fhir/uv/ips/STU1Latest Release is 1.1.0
Templates: fhir.base.template#current. Tools: 0.3.0
Dependent IGs:no references
Global Profiles:(none declared)
Terminology Server(s):http://tx.fhir.org/r4 (details)
HTA Analysis:Non-HL7 Igs are exempt from terminology dependency analysis
R5 Dependencies:(none)
Draft Dependencies:
Modifier Extensions:(none)
Previous Version Comparison: Unable to compare with previous version: Unable to find version history at https://fhir.cqdg.ca (Problem #1 with package-list.json at https://fhir.cqdg.ca: null)
IPA Comparison: n/a
IPS Comparison: n/a
Validation Flags: On: autoLoad; Off: hintAboutNonMustSupport, anyExtensionsAllowed, checkAggregation, showReferenceMessages, noExperimentalContent, displayWarnings
Summary: errors = 30, warn = 78, info = 14, broken links = 20
FilenameErrorsWarningsHints
Build Errors2050
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-age-at-onset200
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-bioinfo-analysis-code000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-cause-of-death-codes000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-cqdg-dataset-cs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-cqdg-observation-code000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-cqdg-study-cs000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-data-category000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-data-collection-method000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-data-type000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-disease-status000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-document-format000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-duo-codes200
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-experimental-strategy000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-family-type000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-genome-build000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-population000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-qc-ethnicity000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-qc-sample-type200
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-research-domain000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-study-design000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-tumor-normal-designation000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-v3-role-code000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/Condition-ConditionExample131
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/DocumentReference-DocumentReferenceExample1422
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/DocumentReference-DocumentReferenceExample2022
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/Group-CQDGGroupExample020
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ImplementationGuide-fhir.cqdg000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/Observation-ObsDiseaseStatExample030
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/Observation-ObsPhenotypeExample020
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/Organization-OrganizationExample010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/Patient-PatientExample210
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ResearchStudy-ResearchStudyExample087
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/Specimen-SpecimenExample311
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/Specimen-SpecimenExample2111
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-AccessLimitations010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-AccessRequirements010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-AgeAtEvent000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-AgeAtRecruitment000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-AgeOfDeath000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-CQDGObservationCauseOfDeath110
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-CQDGObservationDiseaseStatus000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-CQDGObservationPhenotype400
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-CQDGObservationTumorNormalDesignation110
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-DataCategoryExtension010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-DataCollectionMethodExtension010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-FullSizeExtension010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-QCEthnicity010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-Restricted010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-StudyDesignExtension010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-cqdg-condition000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-cqdg-document-reference010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-cqdg-group000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-cqdg-observation-group010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-cqdg-organization010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-cqdg-patient000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-cqdg-research-study000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-cqdg-specimen000
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-cqdg-task010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-datasetExtension310
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-expectedStudyContent310
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-population-info020
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-sequencingExperimentExtension010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-workflowExtension010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/Task-CQDGTaskExample110
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-access-limitation-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-access-requirement-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-age-at-onset-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-bioinfo-analysis-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-cause-of-death-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-cqdg-diagnosis-vs020
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-cqdg-observation-category010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-data-category-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-data-collection-method-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-data-type-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-disease-status-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-experimental-strategy-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-family-type-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-file-format010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-genome-build-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-phenotype-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-population-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-qc-ethnicity-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-relationship-to-proband010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-research-domain-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-sample-type-tissue-source-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-study-design-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-study-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-tumor-normal-designation-vs010

n/a Show Validation Information

output​/StructureDefinition-CQDGObservationCauseOfDeath-definitions​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/span​/a at Line 231, column 1590errorThe link 'https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs' for "https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationCauseOfDeath-definitions​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/span​/a at Line 442, column 295errorThe link 'https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs' for "https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationCauseOfDeath​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 322, column 269errorThe link 'https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs' for "https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationCauseOfDeath​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 330, column 178errorThe link 'https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs' for "https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationCauseOfDeath​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 808, column 237errorThe link 'https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs' for "https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationCauseOfDeath​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 1105, column 178errorThe link 'https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs' for "https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationCauseOfDeath​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 1326, column 269errorThe link 'https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs' for "https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationCauseOfDeath​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 1333, column 178errorThe link 'https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs' for "https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationCauseOfDeath​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 1811, column 237errorThe link 'https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs' for "https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationCauseOfDeath​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 2108, column 178errorThe link 'https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs' for "https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationTumorNormalDesignation-definitions​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/span​/a at Line 231, column 1590errorThe link 'https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs' for "https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationTumorNormalDesignation-definitions​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/span​/a at Line 442, column 295errorThe link 'https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs' for "https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationTumorNormalDesignation​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 322, column 269errorThe link 'https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs' for "https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationTumorNormalDesignation​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 330, column 178errorThe link 'https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs' for "https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationTumorNormalDesignation​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 808, column 237errorThe link 'https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs' for "https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationTumorNormalDesignation​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 1105, column 178errorThe link 'https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs' for "https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationTumorNormalDesignation​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 1326, column 269errorThe link 'https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs' for "https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationTumorNormalDesignation​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 1333, column 178errorThe link 'https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs' for "https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationTumorNormalDesignation​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 1811, column 237errorThe link 'https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs' for "https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationTumorNormalDesignation​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 2108, column 178errorThe link 'https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs' for "https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs" cannot be resolved
1warningThe HTML fragment 'ip-statements.xhtml' is not included anywhere in the produced implementation guide
2warningAn HTML fragment from the set [cross-version-analysis.xhtml, cross-version-analysis-inline.xhtml] is not included anywhere in the produced implementation guide
3warningAn HTML fragment from the set [dependency-table.xhtml, dependency-table-short.xhtml, dependency-table-nontech.xhtml] is not included anywhere in the produced implementation guide
4warningThe HTML fragment 'globals-table.xhtml' is not included anywhere in the produced implementation guide
IGwarningThe IG is not for the international realm, and it uses SNOMED CT, so it should fix the SCT edition in the expansion parameters

fsh-generated/resources/CodeSystem-age-at-onset.json Show Validation Information (1)

PathSeverityMessage
CodeSystem​.where(url = 'http:​/​/purl​.obolibrary​.org​/obo​/hp​.owl')errorConformance resource /home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-age-at-onset.json - the canonical URL (https://fhir.cqdg.ca/CodeSystem/age-at-onset) does not match the URL (http://purl.obolibrary.org/obo/hp.owl)
fsh-generated​/resources​/CodeSystem-age-at-onseterrorURL Mismatch https://fhir.cqdg.ca/CodeSystem/age-at-onset vs http://purl.obolibrary.org/obo/hp.owl

fsh-generated/resources/CodeSystem-bioinfo-analysis-code.json Show Validation Information (1)


fsh-generated/resources/CodeSystem-cause-of-death-codes.json Show Validation Information (1)


fsh-generated/resources/CodeSystem-cqdg-dataset-cs.json Show Validation Information (1)

PathSeverityMessage
CodeSystemwarningWhen a CodeSystem has content = 'complete', it doesnt make sense for there to be no concepts defined

fsh-generated/resources/CodeSystem-cqdg-observation-code.json Show Validation Information (1)


fsh-generated/resources/CodeSystem-cqdg-study-cs.json Show Validation Information (1)


fsh-generated/resources/CodeSystem-data-category.json Show Validation Information (1)


fsh-generated/resources/CodeSystem-data-collection-method.json Show Validation Information (1)


fsh-generated/resources/CodeSystem-data-type.json Show Validation Information (1)


fsh-generated/resources/CodeSystem-disease-status.json Show Validation Information (1)


fsh-generated/resources/CodeSystem-document-format.json Show Validation Information (1)


fsh-generated/resources/CodeSystem-duo-codes.json Show Validation Information (1)

PathSeverityMessage
CodeSystem​.where(url = 'http:​/​/purl​.obolibrary​.org​/obo​/duo​.owl')errorConformance resource /home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-duo-codes.json - the canonical URL (https://fhir.cqdg.ca/CodeSystem/duo-codes) does not match the URL (http://purl.obolibrary.org/obo/duo.owl)
fsh-generated​/resources​/CodeSystem-duo-codeserrorURL Mismatch https://fhir.cqdg.ca/CodeSystem/duo-codes vs http://purl.obolibrary.org/obo/duo.owl

fsh-generated/resources/CodeSystem-experimental-strategy.json Show Validation Information (1)


fsh-generated/resources/CodeSystem-family-type.json Show Validation Information (1)


fsh-generated/resources/CodeSystem-genome-build.json Show Validation Information (1)


fsh-generated/resources/CodeSystem-population.json Show Validation Information (1)


fsh-generated/resources/CodeSystem-qc-ethnicity.json Show Validation Information (1)


fsh-generated/resources/CodeSystem-qc-sample-type.json Show Validation Information (1)

PathSeverityMessage
CodeSystem​.where(url = 'http:​/​/purl​.obolibrary​.org​/obo​/ncit​.owl')errorConformance resource /home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-qc-sample-type.json - the canonical URL (https://fhir.cqdg.ca/CodeSystem/qc-sample-type) does not match the URL (http://purl.obolibrary.org/obo/ncit.owl)
fsh-generated​/resources​/CodeSystem-qc-sample-typeerrorURL Mismatch https://fhir.cqdg.ca/CodeSystem/qc-sample-type vs http://purl.obolibrary.org/obo/ncit.owl

fsh-generated/resources/CodeSystem-research-domain.json Show Validation Information (1)


fsh-generated/resources/CodeSystem-study-design.json Show Validation Information (1)


fsh-generated/resources/CodeSystem-tumor-normal-designation.json Show Validation Information (1)


fsh-generated/resources/CodeSystem-v3-role-code.json Show Validation Information (1)


fsh-generated/resources/Condition-ConditionExample.json Show Validation Information (1)

PathSeverityMessage
Condition.meta.tag[0] (l6/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
Condition (l1/c2)errorThe extension https://fhir.cqdg.ca/StructureDefinition/AgeAtEvent is not allowed to be used at this point (allowed = e:ClinicalImpression; this element is [Condition])
Condition.code.coding[0] (l36/c4)warningCoding has no system. A code with no system has no defined meaning, and it cannot be validated. A system should be provided
Condition​.code​.coding[1]​.system (l36​/c4)warningA definition for CodeSystem 'http://purl.obolibrary.org/obo/mondo.owl' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4)
Condition​.stage[0]​.summary​.coding[0]​.code (l51​/c8)informationThe code '254293002' is valid but is not active (from http://tx.fhir.org/r4)

fsh-generated/resources/DocumentReference-DocumentReferenceExample1.json Show Validation Information (1)

PathSeverityMessage
DocumentReference.meta.tag[0] (l6/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
DocumentReference​.meta​.tag[1]​.code (l9​/c8)errorUnknown code 'dataset: ds_name 1' in the CodeSystem 'https://fhir.cqdg.ca/CodeSystem/cqdg-dataset-cs' version '0.1.0'
DocumentReference​.type​.coding[0]​.display (l43​/c4)errorWrong Display Name 'Sequencing Data Supplement' for https://fhir.cqdg.ca/CodeSystem/data-type#Sequencing-data-supplement. Valid display is one of 2 choices: 'Supplement' or 'Supplement' (null) (for the language(s) 'en')
DocumentReference.type (l43/c4)informationNone of the codings provided are in the value set 'Document Type Value Set' (http://hl7.org/fhir/ValueSet/c80-doc-typecodes|4.0.1), and a coding is recommended to come from this value set (codes = https://fhir.cqdg.ca/CodeSystem/data-type#Sequencing-data-supplement)
DocumentReference​.securityLabel[0]​.coding[0] (l34​/c6)warningCoding has no system. A code with no system has no defined meaning, and it cannot be validated. A system should be provided (from http://tx.fhir.org/r4, see log)
DocumentReference​.content[0]​.attachment​.extension[0] (l19​/c12)errorConstraint failed: ext-1: 'Must have either extensions or value[x], not both' (defined in http://hl7.org/fhir/StructureDefinition/Extension)
DocumentReference​.content[0]​.attachment​.extension[0] (l19​/c12)errorThe Extension 'https://fhir.cqdg.ca/StructureDefinition/FullSizeExtension' definition is for a simple extension, so it must contain a value
DocumentReference​.content[0]​.format (l26​/c8)informationThe Coding provided (https://fhir.cqdg.ca/CodeSystem/document-format#TGZ) was not found in the value set 'DocumentReference Format Code Set' (http://hl7.org/fhir/ValueSet/formatcodes|4.0.1), and a code is recommended to come from this value set. (error message = The provided code 'https://fhir.cqdg.ca/CodeSystem/document-format#TGZ: 'TGZ Archive File'' was not found in the value set 'http://hl7.org/fhir/ValueSet/formatcodes|4.0.1')

fsh-generated/resources/DocumentReference-DocumentReferenceExample2.json Show Validation Information (1)

PathSeverityMessage
DocumentReference.meta.tag[0] (l6/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
DocumentReference.type (l40/c4)informationNone of the codings provided are in the value set 'Document Type Value Set' (http://hl7.org/fhir/ValueSet/c80-doc-typecodes|4.0.1), and a coding is recommended to come from this value set (codes = https://fhir.cqdg.ca/CodeSystem/data-type#Aligned-reads)
DocumentReference​.securityLabel[0]​.coding[0] (l31​/c6)warningCoding has no system. A code with no system has no defined meaning, and it cannot be validated. A system should be provided (from http://tx.fhir.org/r4, see log)
DocumentReference​.content[0]​.format (l23​/c8)informationThe Coding provided (https://fhir.cqdg.ca/CodeSystem/document-format#TGZ) was not found in the value set 'DocumentReference Format Code Set' (http://hl7.org/fhir/ValueSet/formatcodes|4.0.1), and a code is recommended to come from this value set. (error message = The provided code 'https://fhir.cqdg.ca/CodeSystem/document-format#TGZ: 'TGZ Archive File'' was not found in the value set 'http://hl7.org/fhir/ValueSet/formatcodes|4.0.1')

fsh-generated/resources/Group-CQDGGroupExample.json Show Validation Information (1)

PathSeverityMessage
Group.meta.tag[0] (l6/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
Group.code.coding[0] (l22/c4)warningCoding has no system. A code with no system has no defined meaning, and it cannot be validated. A system should be provided

fsh-generated/resources/ImplementationGuide-fhir.cqdg.json Show Validation Information (1)


fsh-generated/resources/Observation-ObsDiseaseStatExample.json Show Validation Information (1)

PathSeverityMessage
Observation (l1/c2)warningBest Practice Recommendation: In general, all observations should have a subject
Observation (l1/c2)warningBest Practice Recommendation: In general, all observations should have a performer
Observation (l1/c2)warningBest Practice Recommendation: In general, all observations should have an effective[x] ()

fsh-generated/resources/Observation-ObsPhenotypeExample.json Show Validation Information (1)

PathSeverityMessage
Observation (l1/c2)warningBest Practice Recommendation: In general, all observations should have a performer
Observation (l1/c2)warningBest Practice Recommendation: In general, all observations should have an effective[x] ()

fsh-generated/resources/Organization-OrganizationExample.json Show Validation Information (1)

PathSeverityMessage
Organization.meta.tag[0] (l6/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided

fsh-generated/resources/Patient-PatientExample.json Show Validation Information (1)

PathSeverityMessage
Patient.meta.tag[0] (l6/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
Patient (l1/c2)errorThe extension https://fhir.cqdg.ca/StructureDefinition/AgeAtRecruitment is not allowed to be used at this point (allowed = e:ClinicalImpression; this element is [Patient])
Patient (l1/c2)errorThe extension https://fhir.cqdg.ca/StructureDefinition/AgeOfDeath is not allowed to be used at this point (allowed = e:ClinicalImpression; this element is [Patient])

fsh-generated/resources/ResearchStudy-ResearchStudyExample.json Show Validation Information (4)

PathSeverityMessage
ResearchStudy.identifier[1] (l191/c6)Slicing InformationThis element does not match any known slice defined in the profile https://fhir.cqdg.ca/StructureDefinition/cqdg-research-study|0.1.0 (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning
ResearchStudy​.extension[0]​.value​.ofType(CodeableConcept) (l13​/c8)Slicing InformationThis element does not match any known slice defined in the profile https://fhir.cqdg.ca/StructureDefinition/DataCategoryExtension|0.1.0 (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning
ResearchStudy​.extension[1]​.value​.ofType(CodeableConcept) (l24​/c8)Slicing InformationThis element does not match any known slice defined in the profile https://fhir.cqdg.ca/StructureDefinition/StudyDesignExtension|0.1.0 (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning
ResearchStudy​.extension[2]​.value​.ofType(CodeableConcept) (l35​/c8)Slicing InformationThis element does not match any known slice defined in the profile https://fhir.cqdg.ca/StructureDefinition/DataCollectionMethodExtension|0.1.0 (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning
ResearchStudy​.extension[4]​.value​.ofType(Coding) (l50​/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
ResearchStudy​.extension[5]​.value​.ofType(Coding) (l57​/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
ResearchStudy​.extension[6]​.value​.ofType(Coding) (l64​/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
ResearchStudy​.extension[7]​.value​.ofType(Coding) (l71​/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
ResearchStudy​.extension[8]​.value​.ofType(Coding) (l78​/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
ResearchStudy​.extension[9]​.value​.ofType(Coding) (l85​/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
ResearchStudy​.extension[10]​.value​.ofType(Coding) (l92​/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
ResearchStudy​.extension[14]​.value​.ofType(CodeableConcept) (l154​/c8)Slicing InformationThis element does not match any known slice defined in the profile https://fhir.cqdg.ca/StructureDefinition/DataCategoryExtension|0.1.0 (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning
ResearchStudy​.extension[15]​.value​.ofType(CodeableConcept) (l165​/c8)Slicing InformationThis element does not match any known slice defined in the profile https://fhir.cqdg.ca/StructureDefinition/StudyDesignExtension|0.1.0 (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning
ResearchStudy​.extension[16]​.value​.ofType(CodeableConcept) (l176​/c8)Slicing InformationThis element does not match any known slice defined in the profile https://fhir.cqdg.ca/StructureDefinition/DataCollectionMethodExtension|0.1.0 (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning
ResearchStudy​.category[0]​.coding[0]​.system (l211​/c6)warningA definition for CodeSystem 'https://fhir.cqdg.ca/CodeSystem/study-domain' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4)

fsh-generated/resources/Specimen-SpecimenExample.json Show Validation Information (1)

PathSeverityMessage
Specimen.identifier[1] (l19/c6)Slicing InformationThis element does not match any known slice defined in the profile https://fhir.cqdg.ca/StructureDefinition/cqdg-specimen|0.1.0 (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning
Specimen.meta.tag[0] (l6/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
Specimen (l1/c2)errorThe extension https://fhir.cqdg.ca/StructureDefinition/AgeAtEvent is not allowed to be used at this point (allowed = e:ClinicalImpression; this element is [Specimen])
Specimen​.type​.coding[0]​.display (l40​/c4)errorWrong Display Name 'DNA' for http://purl.obolibrary.org/obo/ncit.owl#NCIT:C12434. Valid display is 'Blood' (for the language(s) 'en')
Specimen​.type​.coding[0]​.system (l43​/c60)errorThe value provided ('http://purl.obolibrary.org/obo/ncit.owl') was not found in the value set 'Ferlab.bio ValueSet/sample-type-tissue-source' (https://fhir.cqdg.ca/ValueSet/sample-type-tissue-source-vs|0.1.0), and a code is required from this value set (error message = The System URI could not be determined for the code 'http://purl.obolibrary.org/obo/ncit.owl' in the ValueSet 'https://fhir.cqdg.ca/ValueSet/sample-type-tissue-source-vs|0.1.0'; The provided code '#http://purl.obolibrary.org/obo/ncit.owl' was not found in the value set 'https://fhir.cqdg.ca/ValueSet/sample-type-tissue-source-vs|0.1.0')

fsh-generated/resources/Specimen-SpecimenExample2.json Show Validation Information (1)

PathSeverityMessage
Specimen.identifier[1] (l19/c6)Slicing InformationThis element does not match any known slice defined in the profile https://fhir.cqdg.ca/StructureDefinition/cqdg-specimen|0.1.0 (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning
Specimen.meta.tag[0] (l6/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
Specimen (l1/c2)errorThe extension https://fhir.cqdg.ca/StructureDefinition/AgeAtEvent is not allowed to be used at this point (allowed = e:ClinicalImpression; this element is [Specimen])

fsh-generated/resources/StructureDefinition-AccessLimitations.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.context[0]warningReview the extension type for AccessLimitations: extensions should not have a context of Element unless it's really intended that they can be used anywhere

fsh-generated/resources/StructureDefinition-AccessRequirements.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.context[0]warningReview the extension type for AccessRequirements: extensions should not have a context of Element unless it's really intended that they can be used anywhere

fsh-generated/resources/StructureDefinition-AgeAtEvent.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-AgeAtRecruitment.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-AgeOfDeath.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-CQDGObservationCauseOfDeath.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.where(url = 'https:​/​/fhir​.cqdg​.ca​/StructureDefinition​/CQDGObservationCauseOfDeath')warningThe Implementation Guide contains no examples for this profile
StructureDefinition.text.diverrorHyperlink 'https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs' at 'div/table/tr/td/a' for 'https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs' does not resolve

fsh-generated/resources/StructureDefinition-CQDGObservationDiseaseStatus.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-CQDGObservationPhenotype.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.snapshot​.element[36]​.binding​.valueSet (l1​/c70215)errorCanonical URL 'http://purl.obolibrary.org/obo/hp.owl' refers to a resource that has the wrong type. Found CodeSystem expecting one of [ValueSet]
StructureDefinition​.differential​.element[3]​.binding​.valueSet (l1​/c119098)errorCanonical URL 'http://purl.obolibrary.org/obo/hp.owl' refers to a resource that has the wrong type. Found CodeSystem expecting one of [ValueSet]
StructureDefinition​.differential​.element[3]​.bindingerrorThe valueSet reference http://purl.obolibrary.org/obo/hp.owl on element Observation.value[x].coding.system points to something that is not a value set (CodeSystem)
StructureDefinition​.snapshot​.element[36]​.bindingerrorThe valueSet reference http://purl.obolibrary.org/obo/hp.owl on element Observation.value[x].coding.system points to something that is not a value set (CodeSystem)

fsh-generated/resources/StructureDefinition-CQDGObservationTumorNormalDesignation.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.where(url = 'https:​/​/fhir​.cqdg​.ca​/StructureDefinition​/CQDGObservationTumorNormalDesignation')warningThe Implementation Guide contains no examples for this profile
StructureDefinition.text.diverrorHyperlink 'https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs' at 'div/table/tr/td/a' for 'https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs' does not resolve

fsh-generated/resources/StructureDefinition-DataCategoryExtension.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.context[0]warningReview the extension type for DataCategoryExtension: extensions should not have a context of Element unless it's really intended that they can be used anywhere

fsh-generated/resources/StructureDefinition-DataCollectionMethodExtension.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.context[0]warningReview the extension type for DataCollectionMethodExtension: extensions should not have a context of Element unless it's really intended that they can be used anywhere

fsh-generated/resources/StructureDefinition-FullSizeExtension.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.context[0]warningReview the extension type for FullSizeExtension: extensions should not have a context of Element unless it's really intended that they can be used anywhere

fsh-generated/resources/StructureDefinition-QCEthnicity.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.context[0]warningReview the extension type for QCEthnicity: extensions should not have a context of Element unless it's really intended that they can be used anywhere

fsh-generated/resources/StructureDefinition-Restricted.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.context[0]warningReview the extension type for Restricted: extensions should not have a context of Element unless it's really intended that they can be used anywhere

fsh-generated/resources/StructureDefinition-StudyDesignExtension.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.context[0]warningReview the extension type for StudyDesignExtension: extensions should not have a context of Element unless it's really intended that they can be used anywhere

fsh-generated/resources/StructureDefinition-cqdg-condition.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-cqdg-document-reference.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.where(url = 'https:​/​/fhir​.cqdg​.ca​/StructureDefinition​/cqdg-document-reference')warningThe Implementation Guide contains no examples for this profile

fsh-generated/resources/StructureDefinition-cqdg-group.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-cqdg-observation-group.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.where(url = 'https:​/​/fhir​.cqdg​.ca​/StructureDefinition​/cqdg-observation-group')warningThe Implementation Guide contains no examples for this profile

fsh-generated/resources/StructureDefinition-cqdg-organization.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.where(url = 'https:​/​/fhir​.cqdg​.ca​/StructureDefinition​/cqdg-organization')warningThe Implementation Guide contains no examples for this profile

fsh-generated/resources/StructureDefinition-cqdg-patient.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-cqdg-research-study.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-cqdg-specimen.json Show Validation Information (1)


fsh-generated/resources/StructureDefinition-cqdg-task.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.where(url = 'https:​/​/fhir​.cqdg​.ca​/StructureDefinition​/cqdg-task')warningThe Implementation Guide contains no examples for this profile

fsh-generated/resources/StructureDefinition-datasetExtension.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.where(url = 'https:​/​/fhir​.cqdg​.ca​/StructureDefinition​/dataset')errorConformance resource /home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-datasetExtension.json - the canonical URL (https://fhir.cqdg.ca/StructureDefinition/datasetExtension) does not match the URL (https://fhir.cqdg.ca/StructureDefinition/dataset)
StructureDefinition.urlerrorResource id/url mismatch: datasetExtension/https://fhir.cqdg.ca/StructureDefinition/dataset
StructureDefinition.context[0]warningReview the extension type for datasetExtension: extensions should not have a context of Element unless it's really intended that they can be used anywhere
fsh-generated​/resources​/StructureDefinition-datasetExtensionerrorURL Mismatch https://fhir.cqdg.ca/StructureDefinition/datasetExtension vs https://fhir.cqdg.ca/StructureDefinition/dataset

fsh-generated/resources/StructureDefinition-expectedStudyContent.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.where(url = 'https:​/​/fhir​.cqdg​.ca​/StructureDefinition​/ResearchStudy​/ExpectedContent')errorConformance resource /home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-expectedStudyContent.json - the canonical URL (https://fhir.cqdg.ca/StructureDefinition/expectedStudyContent) does not match the URL (https://fhir.cqdg.ca/StructureDefinition/ResearchStudy/ExpectedContent)
StructureDefinition.urlerrorResource id/url mismatch: expectedStudyContent/https://fhir.cqdg.ca/StructureDefinition/ResearchStudy/ExpectedContent
StructureDefinition.context[0]warningReview the extension type for expectedStudyContent: extensions should not have a context of Element unless it's really intended that they can be used anywhere
fsh-generated​/resources​/StructureDefinition-expectedStudyContenterrorURL Mismatch https://fhir.cqdg.ca/StructureDefinition/expectedStudyContent vs https://fhir.cqdg.ca/StructureDefinition/ResearchStudy/ExpectedContent

fsh-generated/resources/StructureDefinition-population-info.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.context[0]warningReview the extension type for population-info: extensions should not have a context of Element unless it's really intended that they can be used anywhere
StructureDefinition​.where(url = 'https:​/​/fhir​.cqdg​.ca​/StructureDefinition​/population-info')warningThe Implementation Guide contains no examples for this extension

fsh-generated/resources/StructureDefinition-sequencingExperimentExtension.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.context[0]warningReview the extension type for sequencingExperimentExtension: extensions should not have a context of Element unless it's really intended that they can be used anywhere

fsh-generated/resources/StructureDefinition-workflowExtension.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.context[0]warningReview the extension type for workflowExtension: extensions should not have a context of Element unless it's really intended that they can be used anywhere

fsh-generated/resources/Task-CQDGTaskExample.json Show Validation Information (1)

PathSeverityMessage
Task​.output[3]​.type​.coding[0]​.display (l146​/c8)errorWrong Display Name 'Sequencing-data-supplement' for https://fhir.cqdg.ca/CodeSystem/data-type#Sequencing-data-supplement. Valid display is one of 2 choices: 'Supplement' or 'Supplement' (null) (for the language(s) 'en')
Task.meta.profile[0] (l1/c2)warningProfile reference 'https://fhir.cqdg.ca/StructureDefinition/cqgc-analysis-task' has not been checked because it could not be found, and the validator is set to not fetch unknown profiles

fsh-generated/resources/ValueSet-access-limitation-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c951)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-access-requirement-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c963)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-age-at-onset-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c1012)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-bioinfo-analysis-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c988)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-cause-of-death-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c957)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-cqdg-diagnosis-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c1174)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present
ValueSet​.where(id = 'cqdg-diagnosis-vs')warningError from http://tx.fhir.org/r4: Unable to provide support for code system http://purl.obolibrary.org/obo/mondo.owl (from server, see log)

fsh-generated/resources/ValueSet-cqdg-observation-category.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c1025)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-data-category-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c937)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-data-collection-method-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c1044)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-data-type-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c889)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-disease-status-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c949)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-experimental-strategy-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c1027)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-family-type-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c913)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-file-format.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c905)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-genome-build-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c925)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-phenotype-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c885)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-population-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c902)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-qc-ethnicity-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c924)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-relationship-to-proband.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c1003)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-research-domain-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c956)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-sample-type-tissue-source-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c1032)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-study-design-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c925)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-study-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c871)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-tumor-normal-designation-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c1068)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

Suppressed Messages (Warnings, hints, broken links)

See https://github.com/FHIR/sample-ig/blob/master/input/ignoreWarnings.txt for examples

Errors sorted by type


All_observations_should_have_a_performer

fsh-generated/resources/Observation-ObsDiseaseStatExample.jsonBest Practice Recommendation: In general, all observations should have a performer
fsh-generated/resources/Observation-ObsPhenotypeExample.jsonBest Practice Recommendation: In general, all observations should have a performer

All_observations_should_have_a_subject

fsh-generated/resources/Observation-ObsDiseaseStatExample.jsonBest Practice Recommendation: In general, all observations should have a subject

All_observations_should_have_an_effectiveDateTime_or_an_effectivePeriod

fsh-generated/resources/Observation-ObsDiseaseStatExample.jsonBest Practice Recommendation: In general, all observations should have an effective[x] ()
fsh-generated/resources/Observation-ObsPhenotypeExample.jsonBest Practice Recommendation: In general, all observations should have an effective[x] ()

Extension_EXTP_Context_Wrong

fsh-generated/resources/Condition-ConditionExample.jsonThe extension https://fhir.cqdg.ca/StructureDefinition/AgeAtEvent is not allowed to be used at this point (allowed = e:ClinicalImpression; this element is [Condition])
fsh-generated/resources/Patient-PatientExample.jsonThe extension https://fhir.cqdg.ca/StructureDefinition/AgeAtRecruitment is not allowed to be used at this point (allowed = e:ClinicalImpression; this element is [Patient])
fsh-generated/resources/Patient-PatientExample.jsonThe extension https://fhir.cqdg.ca/StructureDefinition/AgeOfDeath is not allowed to be used at this point (allowed = e:ClinicalImpression; this element is [Patient])
fsh-generated/resources/Specimen-SpecimenExample.jsonThe extension https://fhir.cqdg.ca/StructureDefinition/AgeAtEvent is not allowed to be used at this point (allowed = e:ClinicalImpression; this element is [Specimen])
fsh-generated/resources/Specimen-SpecimenExample2.jsonThe extension https://fhir.cqdg.ca/StructureDefinition/AgeAtEvent is not allowed to be used at this point (allowed = e:ClinicalImpression; this element is [Specimen])

Extension_EXT_Simple_ABSENT

fsh-generated/resources/DocumentReference-DocumentReferenceExample1.jsonThe Extension 'https://fhir.cqdg.ca/StructureDefinition/FullSizeExtension' definition is for a simple extension, so it must contain a value

RESOURCE_CANONICAL_MISMATCH

fsh-generated/resources/CodeSystem-age-at-onset.jsonConformance resource /home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-age-at-onset.json - the canonical URL (https://fhir.cqdg.ca/CodeSystem/age-at-onset) does not match the URL (http://purl.obolibrary.org/obo/hp.owl)
fsh-generated/resources/CodeSystem-duo-codes.jsonConformance resource /home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-duo-codes.json - the canonical URL (https://fhir.cqdg.ca/CodeSystem/duo-codes) does not match the URL (http://purl.obolibrary.org/obo/duo.owl)
fsh-generated/resources/CodeSystem-qc-sample-type.jsonConformance resource /home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-qc-sample-type.json - the canonical URL (https://fhir.cqdg.ca/CodeSystem/qc-sample-type) does not match the URL (http://purl.obolibrary.org/obo/ncit.owl)
fsh-generated/resources/StructureDefinition-datasetExtension.jsonConformance resource /home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-datasetExtension.json - the canonical URL (https://fhir.cqdg.ca/StructureDefinition/datasetExtension) does not match the URL (https://fhir.cqdg.ca/StructureDefinition/dataset)
fsh-generated/resources/StructureDefinition-expectedStudyContent.jsonConformance resource /home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-expectedStudyContent.json - the canonical URL (https://fhir.cqdg.ca/StructureDefinition/expectedStudyContent) does not match the URL (https://fhir.cqdg.ca/StructureDefinition/ResearchStudy/ExpectedContent)

RESOURCE_ID_MISMATCH

fsh-generated/resources/StructureDefinition-datasetExtension.jsonResource id/url mismatch: datasetExtension/https://fhir.cqdg.ca/StructureDefinition/dataset
fsh-generated/resources/StructureDefinition-expectedStudyContent.jsonResource id/url mismatch: expectedStudyContent/https://fhir.cqdg.ca/StructureDefinition/ResearchStudy/ExpectedContent

SD_ED_BIND_NOT_VS

fsh-generated/resources/StructureDefinition-CQDGObservationPhenotype.jsonThe valueSet reference http://purl.obolibrary.org/obo/hp.owl on element Observation.value[x].coding.system points to something that is not a value set (CodeSystem)
fsh-generated/resources/StructureDefinition-CQDGObservationPhenotype.jsonThe valueSet reference http://purl.obolibrary.org/obo/hp.owl on element Observation.value[x].coding.system points to something that is not a value set (CodeSystem)

TERMINOLOGY_TX_SYSTEM_NO_CODE

fsh-generated/resources/Condition-ConditionExample.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/DocumentReference-DocumentReferenceExample1.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/DocumentReference-DocumentReferenceExample2.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/Group-CQDGGroupExample.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/Organization-OrganizationExample.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/Patient-PatientExample.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/ResearchStudy-ResearchStudyExample.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/ResearchStudy-ResearchStudyExample.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/ResearchStudy-ResearchStudyExample.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/ResearchStudy-ResearchStudyExample.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/ResearchStudy-ResearchStudyExample.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/ResearchStudy-ResearchStudyExample.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/ResearchStudy-ResearchStudyExample.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/Specimen-SpecimenExample.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/Specimen-SpecimenExample2.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided

TYPE_SPECIFIC_CHECKS_DT_CANONICAL_TYPE

fsh-generated/resources/StructureDefinition-CQDGObservationPhenotype.jsonCanonical URL 'http://purl.obolibrary.org/obo/hp.owl' refers to a resource that has the wrong type. Found CodeSystem expecting one of [ValueSet]
fsh-generated/resources/StructureDefinition-CQDGObservationPhenotype.jsonCanonical URL 'http://purl.obolibrary.org/obo/hp.owl' refers to a resource that has the wrong type. Found CodeSystem expecting one of [ValueSet]

Terminology_TX_NoValid_14

fsh-generated/resources/DocumentReference-DocumentReferenceExample1.jsonThe Coding provided (https://fhir.cqdg.ca/CodeSystem/document-format#TGZ) was not found in the value set 'DocumentReference Format Code Set' (http://hl7.org/fhir/ValueSet/formatcodes|4.0.1), and a code is recommended to come from this value set. (error message = The provided code 'https://fhir.cqdg.ca/CodeSystem/document-format#TGZ: 'TGZ Archive File'' was not found in the value set 'http://hl7.org/fhir/ValueSet/formatcodes|4.0.1')
fsh-generated/resources/DocumentReference-DocumentReferenceExample2.jsonThe Coding provided (https://fhir.cqdg.ca/CodeSystem/document-format#TGZ) was not found in the value set 'DocumentReference Format Code Set' (http://hl7.org/fhir/ValueSet/formatcodes|4.0.1), and a code is recommended to come from this value set. (error message = The provided code 'https://fhir.cqdg.ca/CodeSystem/document-format#TGZ: 'TGZ Archive File'' was not found in the value set 'http://hl7.org/fhir/ValueSet/formatcodes|4.0.1')

Terminology_TX_NoValid_16

fsh-generated/resources/Specimen-SpecimenExample.jsonThe value provided ('http://purl.obolibrary.org/obo/ncit.owl') was not found in the value set 'Ferlab.bio ValueSet/sample-type-tissue-source' (https://fhir.cqdg.ca/ValueSet/sample-type-tissue-source-vs|0.1.0), and a code is required from this value set (error message = The System URI could not be determined for the code 'http://purl.obolibrary.org/obo/ncit.owl' in the ValueSet 'https://fhir.cqdg.ca/ValueSet/sample-type-tissue-source-vs|0.1.0'; The provided code '#http://purl.obolibrary.org/obo/ncit.owl' was not found in the value set 'https://fhir.cqdg.ca/ValueSet/sample-type-tissue-source-vs|0.1.0')

Terminology_TX_NoValid_3_CC

fsh-generated/resources/DocumentReference-DocumentReferenceExample1.jsonNone of the codings provided are in the value set 'Document Type Value Set' (http://hl7.org/fhir/ValueSet/c80-doc-typecodes|4.0.1), and a coding is recommended to come from this value set (codes = https://fhir.cqdg.ca/CodeSystem/data-type#Sequencing-data-supplement)
fsh-generated/resources/DocumentReference-DocumentReferenceExample2.jsonNone of the codings provided are in the value set 'Document Type Value Set' (http://hl7.org/fhir/ValueSet/c80-doc-typecodes|4.0.1), and a coding is recommended to come from this value set (codes = https://fhir.cqdg.ca/CodeSystem/data-type#Aligned-reads)

This_element_does_not_match_any_known_slice_

fsh-generated/resources/ResearchStudy-ResearchStudyExample.jsonThis element does not match any known slice defined in the profile https://fhir.cqdg.ca/StructureDefinition/cqdg-research-study|0.1.0 (this may not be a problem, but you should check that it's not intended to match a slice)
fsh-generated/resources/ResearchStudy-ResearchStudyExample.jsonThis element does not match any known slice defined in the profile https://fhir.cqdg.ca/StructureDefinition/DataCategoryExtension|0.1.0 (this may not be a problem, but you should check that it's not intended to match a slice)
fsh-generated/resources/ResearchStudy-ResearchStudyExample.jsonThis element does not match any known slice defined in the profile https://fhir.cqdg.ca/StructureDefinition/StudyDesignExtension|0.1.0 (this may not be a problem, but you should check that it's not intended to match a slice)
fsh-generated/resources/ResearchStudy-ResearchStudyExample.jsonThis element does not match any known slice defined in the profile https://fhir.cqdg.ca/StructureDefinition/DataCollectionMethodExtension|0.1.0 (this may not be a problem, but you should check that it's not intended to match a slice)
fsh-generated/resources/ResearchStudy-ResearchStudyExample.jsonThis element does not match any known slice defined in the profile https://fhir.cqdg.ca/StructureDefinition/DataCategoryExtension|0.1.0 (this may not be a problem, but you should check that it's not intended to match a slice)
fsh-generated/resources/ResearchStudy-ResearchStudyExample.jsonThis element does not match any known slice defined in the profile https://fhir.cqdg.ca/StructureDefinition/StudyDesignExtension|0.1.0 (this may not be a problem, but you should check that it's not intended to match a slice)
fsh-generated/resources/ResearchStudy-ResearchStudyExample.jsonThis element does not match any known slice defined in the profile https://fhir.cqdg.ca/StructureDefinition/DataCollectionMethodExtension|0.1.0 (this may not be a problem, but you should check that it's not intended to match a slice)
fsh-generated/resources/Specimen-SpecimenExample.jsonThis element does not match any known slice defined in the profile https://fhir.cqdg.ca/StructureDefinition/cqdg-specimen|0.1.0 (this may not be a problem, but you should check that it's not intended to match a slice)
fsh-generated/resources/Specimen-SpecimenExample2.jsonThis element does not match any known slice defined in the profile https://fhir.cqdg.ca/StructureDefinition/cqdg-specimen|0.1.0 (this may not be a problem, but you should check that it's not intended to match a slice)

VALIDATION_VAL_PROFILE_UNKNOWN_NOT_POLICY

fsh-generated/resources/Task-CQDGTaskExample.jsonProfile reference 'https://fhir.cqdg.ca/StructureDefinition/cqgc-analysis-task' has not been checked because it could not be found, and the validator is set to not fetch unknown profiles