CQDG_FHIR_IG - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions
Extension: Ferlab.bio StructureDefinition/sequencing-experiment
| Official URL: https://fhir.cqdg.ca/StructureDefinition/sequencingExperimentExtension | Version: 0.1.0 | |||
| Active as of 2024-12-18 | Computable Name: SequencingExperimentExtension | |||
Sequencing Experiment Extension
Context of Use
This extension may be used on the following element(s):
- Element ID Element
Usage info
Usage:
- Examples for this Extension: Task/CQDGTaskExample
Formal Views of Extension Content
Description of Profiles, Differentials, Snapshots, and how the XML and JSON presentations work.
This structure is derived from Extension
Summary
Complex Extension: Sequencing Experiment Extension
- runName: string: No description
- isPairedEnd: boolean: No description
- readLength: string: No description
- experimentalStrategy: Coding: An Extension
- platform: string: No description
- runDate: dateTime: No description
- labAliquotId: string: No description
- ldmSampleId: string: No description
This structure is derived from Extension
| Name | Flags | Card. | Type | Description & Constraints |
|---|---|---|---|---|
  Extension |
0..* | Extension | Ferlab.bio StructureDefinition/sequencing-experiment | |
  extension |
1..* | Extension | Extension | |
  Slices for extension |
Content/Rules for all slices | |||
   extension:runName |
S | 0..1 | Extension | Extension |
  extension |
0..0 | |||
| url |
1..1 | uri | "runName" | |
  value[x] |
0..1 | string | Value of extension | |
| extension:isPairedEnd |
S | 0..1 | Extension | Extension |
| extension |
0..0 | |||
| url |
1..1 | uri | "isPairedEnd" | |
| value[x] |
0..1 | boolean | Value of extension | |
| extension:readLength |
S | 0..1 | Extension | Extension |
| extension |
0..0 | |||
| url |
1..1 | uri | "readLength" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:experimentalStrategy |
0..1 | Extension | Extension | |
| extension |
0..0 | |||
| url |
1..1 | uri | "experimentalStrategy" | |
 value[x] |
0..1 | Coding | Value of extension Binding: Ferlab.bio ValueSet/experimental-strategy (required) | |
| extension:platform |
S | 1..1 | Extension | Extension |
| extension |
0..0 | |||
| url |
1..1 | uri | "platform" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:runDate |
S | 0..1 | Extension | Extension |
| extension |
0..0 | |||
| url |
1..1 | uri | "runDate" | |
| value[x] |
0..1 | dateTime | Value of extension | |
| extension:labAliquotId |
S | 0..1 | Extension | Extension |
| extension |
0..0 | |||
| url |
1..1 | uri | "labAliquotId" | |
| value[x] |
0..1 | string | Value of extension | |
 extension:ldmSampleId |
S | 0..1 | Extension | Extension |
 extension |
0..0 | |||
| url |
1..1 | uri | "ldmSampleId" | |
| value[x] |
0..1 | string | Value of extension | |
| url |
1..1 | uri | "https://fhir.cqdg.ca/StructureDefinition/sequencingExperimentExtension" | |
 value[x] |
0..0 | |||
| Documentation for this format | ||||
| Name | Flags | Card. | Type | Description & Constraints |
|---|---|---|---|---|
| Extension |
0..* | Extension | Ferlab.bio StructureDefinition/sequencing-experiment | |
| id |
0..1 | string | Unique id for inter-element referencing | |
| Slices for extension |
1..* | Extension | Extension Slice: Unordered, Open by value:url | |
| extension:runName |
S | 0..1 | Extension | Extension |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "runName" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:isPairedEnd |
S | 0..1 | Extension | Extension |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "isPairedEnd" | |
| value[x] |
0..1 | boolean | Value of extension | |
| extension:readLength |
S | 0..1 | Extension | Extension |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "readLength" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:experimentalStrategy |
0..1 | Extension | Extension | |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "experimentalStrategy" | |
| value[x] |
0..1 | Coding | Value of extension Binding: Ferlab.bio ValueSet/experimental-strategy (required) | |
| extension:platform |
S | 1..1 | Extension | Extension |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "platform" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:runDate |
S | 0..1 | Extension | Extension |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "runDate" | |
| value[x] |
0..1 | dateTime | Value of extension | |
| extension:labAliquotId |
S | 0..1 | Extension | Extension |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "labAliquotId" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:ldmSampleId |
S | 0..1 | Extension | Extension |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "ldmSampleId" | |
| value[x] |
0..1 | string | Value of extension | |
| url |
1..1 | uri | "https://fhir.cqdg.ca/StructureDefinition/sequencingExperimentExtension" | |
| Documentation for this format | ||||
This structure is derived from Extension
Summary
Complex Extension: Sequencing Experiment Extension
- runName: string: No description
- isPairedEnd: boolean: No description
- readLength: string: No description
- experimentalStrategy: Coding: An Extension
- platform: string: No description
- runDate: dateTime: No description
- labAliquotId: string: No description
- ldmSampleId: string: No description
Differential View
This structure is derived from Extension
| Name | Flags | Card. | Type | Description & Constraints |
|---|---|---|---|---|
| Extension |
0..* | Extension | Ferlab.bio StructureDefinition/sequencing-experiment | |
| extension |
1..* | Extension | Extension | |
| Slices for extension |
Content/Rules for all slices | |||
| extension:runName |
S | 0..1 | Extension | Extension |
| extension |
0..0 | |||
| url |
1..1 | uri | "runName" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:isPairedEnd |
S | 0..1 | Extension | Extension |
| extension |
0..0 | |||
| url |
1..1 | uri | "isPairedEnd" | |
| value[x] |
0..1 | boolean | Value of extension | |
| extension:readLength |
S | 0..1 | Extension | Extension |
| extension |
0..0 | |||
| url |
1..1 | uri | "readLength" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:experimentalStrategy |
0..1 | Extension | Extension | |
| extension |
0..0 | |||
| url |
1..1 | uri | "experimentalStrategy" | |
| value[x] |
0..1 | Coding | Value of extension Binding: Ferlab.bio ValueSet/experimental-strategy (required) | |
| extension:platform |
S | 1..1 | Extension | Extension |
| extension |
0..0 | |||
| url |
1..1 | uri | "platform" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:runDate |
S | 0..1 | Extension | Extension |
| extension |
0..0 | |||
| url |
1..1 | uri | "runDate" | |
| value[x] |
0..1 | dateTime | Value of extension | |
| extension:labAliquotId |
S | 0..1 | Extension | Extension |
| extension |
0..0 | |||
| url |
1..1 | uri | "labAliquotId" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:ldmSampleId |
S | 0..1 | Extension | Extension |
| extension |
0..0 | |||
| url |
1..1 | uri | "ldmSampleId" | |
| value[x] |
0..1 | string | Value of extension | |
| url |
1..1 | uri | "https://fhir.cqdg.ca/StructureDefinition/sequencingExperimentExtension" | |
| value[x] |
0..0 | |||
| Documentation for this format | ||||
Snapshot View
| Name | Flags | Card. | Type | Description & Constraints |
|---|---|---|---|---|
| Extension |
0..* | Extension | Ferlab.bio StructureDefinition/sequencing-experiment | |
| id |
0..1 | string | Unique id for inter-element referencing | |
| Slices for extension |
1..* | Extension | Extension Slice: Unordered, Open by value:url | |
| extension:runName |
S | 0..1 | Extension | Extension |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "runName" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:isPairedEnd |
S | 0..1 | Extension | Extension |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "isPairedEnd" | |
| value[x] |
0..1 | boolean | Value of extension | |
| extension:readLength |
S | 0..1 | Extension | Extension |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "readLength" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:experimentalStrategy |
0..1 | Extension | Extension | |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "experimentalStrategy" | |
| value[x] |
0..1 | Coding | Value of extension Binding: Ferlab.bio ValueSet/experimental-strategy (required) | |
| extension:platform |
S | 1..1 | Extension | Extension |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "platform" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:runDate |
S | 0..1 | Extension | Extension |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "runDate" | |
| value[x] |
0..1 | dateTime | Value of extension | |
| extension:labAliquotId |
S | 0..1 | Extension | Extension |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "labAliquotId" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:ldmSampleId |
S | 0..1 | Extension | Extension |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "ldmSampleId" | |
| value[x] |
0..1 | string | Value of extension | |
| url |
1..1 | uri | "https://fhir.cqdg.ca/StructureDefinition/sequencingExperimentExtension" | |
| Documentation for this format | ||||
Other representations of profile: CSV, Excel, Schematron
Terminology Bindings
| Path | Conformance | ValueSet | URI |
| Extension.extension:experimentalStrategy.value[x] | required | CQDGFamilyTypeVS (a valid code from Ferlab.bio CodeSystem/experimental-strategy)https://fhir.cqdg.ca/ValueSet/experimental-strategy-vsfrom this IG |
Constraints
| Id | Grade | Path(s) | Details | Requirements |
| ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) | |
| ext-1 | error | **ALL** extensions | Must have either extensions or value[x], not both : extension.exists() != value.exists() |