CQDG_FHIR_IG - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions
Extension: Ferlab.bio StructureDefinition/sequencing-experiment
| Official URL: https://fhir.cqdg.ca/StructureDefinition/sequencingExperimentExtension | Version: 0.1.0 | |||
| Active as of 2025-08-20 | Computable Name: SequencingExperimentExtension | |||
Sequencing Experiment Extension
Context of Use
-
Element ID:
Element
This extension may be used on the following element(s)
Usage info
Usages:
- Use this Extension: Ferlab.bio Profile/cqdg-task
- Examples for this Extension: Task/CQDGTaskExample
You can also check for usages in the FHIR IG Statistics
Formal Views of Extension Content
Description of Profiles, Differentials, Snapshots, and how the XML and JSON presentations work.
This structure is derived from Extension
| Name | Flags | Card. | Type | Description & Constraints Filter:   |
|---|---|---|---|---|
  Extension |
0..* | Extension | Ferlab.bio StructureDefinition/sequencing-experiment | |
  extension |
6..* | Extension | Extension | |
  Slices for extension |
Content/Rules for all slices | |||
   extension:experimentalStrategy |
1..1 | Extension | Extension | |
  extension |
0..0 | |||
| url |
1..1 | uri | "experimentalStrategy" | |
  value[x] |
0..1 | Coding | Value of extension Binding: Ferlab.bio ValueSet/experimental-strategy (required) | |
| extension:isPairedEnd |
1..1 | Extension | Extension | |
| extension |
0..0 | |||
| url |
1..1 | uri | "isPairedEnd" | |
 value[x] |
0..1 | boolean | Value of extension | |
| extension:platform |
1..1 | Extension | Extension | |
| extension |
0..0 | |||
| url |
1..1 | uri | "platform" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:protocol |
0..1 | Extension | Extension | |
| extension |
0..0 | |||
| url |
1..1 | uri | "protocol" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:readLength |
1..1 | Extension | Extension | |
| extension |
0..0 | |||
| url |
1..1 | uri | "readLength" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:selection |
S | 1..1 | Extension | Extension |
| extension |
0..0 | |||
| url |
1..1 | uri | "selection" | |
| value[x] |
0..1 | Coding | Value of extension Binding: Sequencing Experiment Selection (required) | |
| extension:source |
S | 1..1 | Extension | Extension |
| extension |
0..0 | |||
| url |
1..1 | uri | "source" | |
| value[x] |
0..1 | Coding | Value of extension Binding: Sequencing Experiment Source (required) | |
| extension:targetCaptureKit |
0..1 | Extension | Extension | |
| extension |
0..0 | |||
| url |
1..1 | uri | "targetCaptureKit" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:targetLoci |
0..1 | Extension | Extension | |
| extension |
0..0 | |||
| url |
1..1 | uri | "targetLoci" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:runDates |
0..* | Extension | Extension | |
| extension |
0..0 | |||
| url |
1..1 | uri | "runDates" | |
| value[x] |
0..1 | date | Value of extension | |
 extension:runIds |
0..* | Extension | Extension | |
 extension |
0..0 | |||
| url |
1..1 | uri | "runIds" | |
| value[x] |
0..1 | string | Value of extension | |
| url |
1..1 | uri | "https://fhir.cqdg.ca/StructureDefinition/sequencingExperimentExtension" | |
 value[x] |
0..0 | |||
| Documentation for this format | ||||
| Name | Flags | Card. | Type | Description & Constraints Filter: |
|---|---|---|---|---|
| Extension |
0..* | Extension | Ferlab.bio StructureDefinition/sequencing-experiment | |
| id |
0..1 | string | Unique id for inter-element referencing | |
| Slices for extension |
6..* | Extension | Extension Slice: Unordered, Open by value:url | |
| extension:experimentalStrategy |
1..1 | Extension | Extension | |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "experimentalStrategy" | |
| value[x] |
0..1 | Coding | Value of extension Binding: Ferlab.bio ValueSet/experimental-strategy (required) | |
| extension:isPairedEnd |
1..1 | Extension | Extension | |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "isPairedEnd" | |
| value[x] |
0..1 | boolean | Value of extension | |
| extension:platform |
1..1 | Extension | Extension | |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "platform" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:protocol |
0..1 | Extension | Extension | |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "protocol" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:readLength |
1..1 | Extension | Extension | |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "readLength" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:selection |
S | 1..1 | Extension | Extension |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "selection" | |
| value[x] |
0..1 | Coding | Value of extension Binding: Sequencing Experiment Selection (required) | |
| extension:source |
S | 1..1 | Extension | Extension |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "source" | |
| value[x] |
0..1 | Coding | Value of extension Binding: Sequencing Experiment Source (required) | |
| extension:targetCaptureKit |
0..1 | Extension | Extension | |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "targetCaptureKit" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:targetLoci |
0..1 | Extension | Extension | |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "targetLoci" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:runDates |
0..* | Extension | Extension | |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "runDates" | |
| value[x] |
0..1 | date | Value of extension | |
| extension:runIds |
0..* | Extension | Extension | |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "runIds" | |
| value[x] |
0..1 | string | Value of extension | |
| url |
1..1 | uri | "https://fhir.cqdg.ca/StructureDefinition/sequencingExperimentExtension" | |
| Documentation for this format | ||||
This structure is derived from Extension
Summary
Complex Extension: Sequencing Experiment Extension
- experimentalStrategy: Coding: An Extension
- isPairedEnd: boolean: No description
- platform: string: No description
- protocol: string: No description
- readLength: string: No description
- selection: Coding: An Extension
- source: Coding: An Extension
- targetCaptureKit: string: No description
- targetLoci: string: No description
- runDates: date: An Extension
- runIds: string: An Extension
Differential View
This structure is derived from Extension
| Name | Flags | Card. | Type | Description & Constraints Filter: |
|---|---|---|---|---|
| Extension |
0..* | Extension | Ferlab.bio StructureDefinition/sequencing-experiment | |
| extension |
6..* | Extension | Extension | |
| Slices for extension |
Content/Rules for all slices | |||
| extension:experimentalStrategy |
1..1 | Extension | Extension | |
| extension |
0..0 | |||
| url |
1..1 | uri | "experimentalStrategy" | |
| value[x] |
0..1 | Coding | Value of extension Binding: Ferlab.bio ValueSet/experimental-strategy (required) | |
| extension:isPairedEnd |
1..1 | Extension | Extension | |
| extension |
0..0 | |||
| url |
1..1 | uri | "isPairedEnd" | |
| value[x] |
0..1 | boolean | Value of extension | |
| extension:platform |
1..1 | Extension | Extension | |
| extension |
0..0 | |||
| url |
1..1 | uri | "platform" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:protocol |
0..1 | Extension | Extension | |
| extension |
0..0 | |||
| url |
1..1 | uri | "protocol" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:readLength |
1..1 | Extension | Extension | |
| extension |
0..0 | |||
| url |
1..1 | uri | "readLength" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:selection |
S | 1..1 | Extension | Extension |
| extension |
0..0 | |||
| url |
1..1 | uri | "selection" | |
| value[x] |
0..1 | Coding | Value of extension Binding: Sequencing Experiment Selection (required) | |
| extension:source |
S | 1..1 | Extension | Extension |
| extension |
0..0 | |||
| url |
1..1 | uri | "source" | |
| value[x] |
0..1 | Coding | Value of extension Binding: Sequencing Experiment Source (required) | |
| extension:targetCaptureKit |
0..1 | Extension | Extension | |
| extension |
0..0 | |||
| url |
1..1 | uri | "targetCaptureKit" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:targetLoci |
0..1 | Extension | Extension | |
| extension |
0..0 | |||
| url |
1..1 | uri | "targetLoci" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:runDates |
0..* | Extension | Extension | |
| extension |
0..0 | |||
| url |
1..1 | uri | "runDates" | |
| value[x] |
0..1 | date | Value of extension | |
| extension:runIds |
0..* | Extension | Extension | |
| extension |
0..0 | |||
| url |
1..1 | uri | "runIds" | |
| value[x] |
0..1 | string | Value of extension | |
| url |
1..1 | uri | "https://fhir.cqdg.ca/StructureDefinition/sequencingExperimentExtension" | |
| value[x] |
0..0 | |||
| Documentation for this format | ||||
Snapshot View
| Name | Flags | Card. | Type | Description & Constraints Filter: |
|---|---|---|---|---|
| Extension |
0..* | Extension | Ferlab.bio StructureDefinition/sequencing-experiment | |
| id |
0..1 | string | Unique id for inter-element referencing | |
| Slices for extension |
6..* | Extension | Extension Slice: Unordered, Open by value:url | |
| extension:experimentalStrategy |
1..1 | Extension | Extension | |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "experimentalStrategy" | |
| value[x] |
0..1 | Coding | Value of extension Binding: Ferlab.bio ValueSet/experimental-strategy (required) | |
| extension:isPairedEnd |
1..1 | Extension | Extension | |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "isPairedEnd" | |
| value[x] |
0..1 | boolean | Value of extension | |
| extension:platform |
1..1 | Extension | Extension | |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "platform" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:protocol |
0..1 | Extension | Extension | |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "protocol" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:readLength |
1..1 | Extension | Extension | |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "readLength" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:selection |
S | 1..1 | Extension | Extension |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "selection" | |
| value[x] |
0..1 | Coding | Value of extension Binding: Sequencing Experiment Selection (required) | |
| extension:source |
S | 1..1 | Extension | Extension |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "source" | |
| value[x] |
0..1 | Coding | Value of extension Binding: Sequencing Experiment Source (required) | |
| extension:targetCaptureKit |
0..1 | Extension | Extension | |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "targetCaptureKit" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:targetLoci |
0..1 | Extension | Extension | |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "targetLoci" | |
| value[x] |
0..1 | string | Value of extension | |
| extension:runDates |
0..* | Extension | Extension | |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "runDates" | |
| value[x] |
0..1 | date | Value of extension | |
| extension:runIds |
0..* | Extension | Extension | |
| id |
0..1 | string | Unique id for inter-element referencing | |
| extension |
0..0 | |||
| url |
1..1 | uri | "runIds" | |
| value[x] |
0..1 | string | Value of extension | |
| url |
1..1 | uri | "https://fhir.cqdg.ca/StructureDefinition/sequencingExperimentExtension" | |
| Documentation for this format | ||||
This structure is derived from Extension
Summary
Complex Extension: Sequencing Experiment Extension
- experimentalStrategy: Coding: An Extension
- isPairedEnd: boolean: No description
- platform: string: No description
- protocol: string: No description
- readLength: string: No description
- selection: Coding: An Extension
- source: Coding: An Extension
- targetCaptureKit: string: No description
- targetLoci: string: No description
- runDates: date: An Extension
- runIds: string: An Extension
Other representations of profile: CSV, Excel, Schematron
Terminology Bindings
| Path | Conformance | ValueSet | URI |
| Extension.extension:experimentalStrategy.value[x] | required | ExperimentalStrategyVS(a valid code from Ferlab.bio CodeSystem/experimental-strategy)https://fhir.cqdg.ca/ValueSet/experimental-strategy-vsFrom this IG | |
| Extension.extension:selection.value[x] | required | SequencingExperimentSelectionVS(a valid code from Ferlab.bio CodeSystem/sequencing-experiment-selection)https://fhir.cqdg.ca/ValueSet/sequencing-experiment-selection-vsFrom this IG | |
| Extension.extension:source.value[x] | required | SequencingExperimentSourceVS(a valid code from Ferlab.bio CodeSystem/sequencing-experiment-source)https://fhir.cqdg.ca/ValueSet/sequencing-experiment-source-vsFrom this IG |
Constraints
| Id | Grade | Path(s) | Details | Requirements |
| ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) | |
| ext-1 | error | **ALL** extensions | Must have either extensions or value[x], not both : extension.exists() != value.exists() |