0.1.0 - ci-build

CQDG_FHIR_IG - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

Extension: Ferlab.bio StructureDefinition/sequencing-experiment

Official URL: https://fhir.cqdg.ca/StructureDefinition/sequencingExperimentExtension Version: 0.1.0
Active as of 2026-01-22 Computable Name: SequencingExperimentExtension

Sequencing Experiment Extension

Context of Use

    This extension may be used on the following element(s)

Usage info

Usages:

You can also check for usages in the FHIR IG Statistics

Formal Views of Extension Content

Description of Profiles, Differentials, Snapshots, and how the XML and JSON presentations work.

This structure is derived from Extension

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Extension 0..* Extension Ferlab.bio StructureDefinition/sequencing-experiment
... extension 6..* Extension Extension
... Slices for extension Content/Rules for all slices
.... extension:experimentalStrategy 1..1 Extension Extension
..... extension 0..0 Extension
..... url 1..1 uri "experimentalStrategy"
..... value[x] 0..1 Coding Value of extension
Binding: Ferlab.bio ValueSet/experimental-strategy (required)
.... extension:isPairedEnd 1..1 Extension Extension
..... extension 0..0 Extension
..... url 1..1 uri "isPairedEnd"
..... value[x] 0..1 boolean Value of extension
.... extension:platform 1..1 Extension Extension
..... extension 0..0 Extension
..... url 1..1 uri "platform"
..... value[x] 0..1 Coding Value of extension
Binding: Sequencing Experiment Platform (required)
.... extension:protocol 0..1 Extension Extension
..... extension 0..0 Extension
..... url 1..1 uri "protocol"
..... value[x] 0..1 string Value of extension
.... extension:readLength 1..1 Extension Extension
..... extension 0..0 Extension
..... url 1..1 uri "readLength"
..... value[x] 0..1 string Value of extension
.... extension:selection S 1..1 Extension Extension
..... extension 0..0 Extension
..... url 1..1 uri "selection"
..... value[x] 0..1 Coding Value of extension
Binding: Sequencing Experiment Selection (required)
.... extension:source S 1..1 Extension Extension
..... extension 0..0 Extension
..... url 1..1 uri "source"
..... value[x] 0..1 Coding Value of extension
Binding: Sequencing Experiment Source (required)
.... extension:targetCaptureKit 0..1 Extension Extension
..... extension 0..0 Extension
..... url 1..1 uri "targetCaptureKit"
..... value[x] 0..1 string Value of extension
.... extension:targetLoci 0..1 Extension Extension
..... extension 0..0 Extension
..... url 1..1 uri "targetLoci"
..... value[x] 0..1 string Value of extension
.... extension:runDates 0..* Extension Extension
..... extension 0..0 Extension
..... url 1..1 uri "runDates"
..... value[x] 0..1 date Value of extension
.... extension:runIds 0..* Extension Extension
..... extension 0..0 Extension
..... url 1..1 uri "runIds"
..... value[x] 0..1 string Value of extension
... url 1..1 uri "https://fhir.cqdg.ca/StructureDefinition/sequencingExperimentExtension"

doco Documentation for this format
NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Extension 0..* Extension Ferlab.bio StructureDefinition/sequencing-experiment
... id 0..1 string Unique id for inter-element referencing
... Slices for extension 6..* Extension Extension
Slice: Unordered, Open by value:url
.... extension:experimentalStrategy 1..1 Extension Extension
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..0 Extension
Slice: Unordered, Open by value:url
..... url 1..1 uri "experimentalStrategy"
..... value[x] 0..1 Coding Value of extension
Binding: Ferlab.bio ValueSet/experimental-strategy (required)
.... extension:isPairedEnd 1..1 Extension Extension
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..0 Extension
Slice: Unordered, Open by value:url
..... url 1..1 uri "isPairedEnd"
..... value[x] 0..1 boolean Value of extension
.... extension:platform 1..1 Extension Extension
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..0 Extension
Slice: Unordered, Open by value:url
..... url 1..1 uri "platform"
..... value[x] 0..1 Coding Value of extension
Binding: Sequencing Experiment Platform (required)
.... extension:protocol 0..1 Extension Extension
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..0 Extension
Slice: Unordered, Open by value:url
..... url 1..1 uri "protocol"
..... value[x] 0..1 string Value of extension
.... extension:readLength 1..1 Extension Extension
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..0 Extension
Slice: Unordered, Open by value:url
..... url 1..1 uri "readLength"
..... value[x] 0..1 string Value of extension
.... extension:selection S 1..1 Extension Extension
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..0 Extension
Slice: Unordered, Open by value:url
..... url 1..1 uri "selection"
..... value[x] 0..1 Coding Value of extension
Binding: Sequencing Experiment Selection (required)
.... extension:source S 1..1 Extension Extension
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..0 Extension
Slice: Unordered, Open by value:url
..... url 1..1 uri "source"
..... value[x] 0..1 Coding Value of extension
Binding: Sequencing Experiment Source (required)
.... extension:targetCaptureKit 0..1 Extension Extension
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..0 Extension
Slice: Unordered, Open by value:url
..... url 1..1 uri "targetCaptureKit"
..... value[x] 0..1 string Value of extension
.... extension:targetLoci 0..1 Extension Extension
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..0 Extension
Slice: Unordered, Open by value:url
..... url 1..1 uri "targetLoci"
..... value[x] 0..1 string Value of extension
.... extension:runDates 0..* Extension Extension
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..0 Extension
Slice: Unordered, Open by value:url
..... url 1..1 uri "runDates"
..... value[x] 0..1 date Value of extension
.... extension:runIds 0..* Extension Extension
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..0 Extension
Slice: Unordered, Open by value:url
..... url 1..1 uri "runIds"
..... value[x] 0..1 string Value of extension
... url 1..1 uri "https://fhir.cqdg.ca/StructureDefinition/sequencingExperimentExtension"

doco Documentation for this format

This structure is derived from Extension

Summary

Complex Extension: Sequencing Experiment Extension

  • experimentalStrategy: Coding: An Extension
  • isPairedEnd: boolean: No description
  • platform: Coding: An Extension
  • protocol: string: No description
  • readLength: string: No description
  • selection: Coding: An Extension
  • source: Coding: An Extension
  • targetCaptureKit: string: No description
  • targetLoci: string: No description
  • runDates: date: An Extension
  • runIds: string: An Extension

Differential View

This structure is derived from Extension

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Extension 0..* Extension Ferlab.bio StructureDefinition/sequencing-experiment
... extension 6..* Extension Extension
... Slices for extension Content/Rules for all slices
.... extension:experimentalStrategy 1..1 Extension Extension
..... extension 0..0 Extension
..... url 1..1 uri "experimentalStrategy"
..... value[x] 0..1 Coding Value of extension
Binding: Ferlab.bio ValueSet/experimental-strategy (required)
.... extension:isPairedEnd 1..1 Extension Extension
..... extension 0..0 Extension
..... url 1..1 uri "isPairedEnd"
..... value[x] 0..1 boolean Value of extension
.... extension:platform 1..1 Extension Extension
..... extension 0..0 Extension
..... url 1..1 uri "platform"
..... value[x] 0..1 Coding Value of extension
Binding: Sequencing Experiment Platform (required)
.... extension:protocol 0..1 Extension Extension
..... extension 0..0 Extension
..... url 1..1 uri "protocol"
..... value[x] 0..1 string Value of extension
.... extension:readLength 1..1 Extension Extension
..... extension 0..0 Extension
..... url 1..1 uri "readLength"
..... value[x] 0..1 string Value of extension
.... extension:selection S 1..1 Extension Extension
..... extension 0..0 Extension
..... url 1..1 uri "selection"
..... value[x] 0..1 Coding Value of extension
Binding: Sequencing Experiment Selection (required)
.... extension:source S 1..1 Extension Extension
..... extension 0..0 Extension
..... url 1..1 uri "source"
..... value[x] 0..1 Coding Value of extension
Binding: Sequencing Experiment Source (required)
.... extension:targetCaptureKit 0..1 Extension Extension
..... extension 0..0 Extension
..... url 1..1 uri "targetCaptureKit"
..... value[x] 0..1 string Value of extension
.... extension:targetLoci 0..1 Extension Extension
..... extension 0..0 Extension
..... url 1..1 uri "targetLoci"
..... value[x] 0..1 string Value of extension
.... extension:runDates 0..* Extension Extension
..... extension 0..0 Extension
..... url 1..1 uri "runDates"
..... value[x] 0..1 date Value of extension
.... extension:runIds 0..* Extension Extension
..... extension 0..0 Extension
..... url 1..1 uri "runIds"
..... value[x] 0..1 string Value of extension
... url 1..1 uri "https://fhir.cqdg.ca/StructureDefinition/sequencingExperimentExtension"

doco Documentation for this format

Snapshot View

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Extension 0..* Extension Ferlab.bio StructureDefinition/sequencing-experiment
... id 0..1 string Unique id for inter-element referencing
... Slices for extension 6..* Extension Extension
Slice: Unordered, Open by value:url
.... extension:experimentalStrategy 1..1 Extension Extension
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..0 Extension
Slice: Unordered, Open by value:url
..... url 1..1 uri "experimentalStrategy"
..... value[x] 0..1 Coding Value of extension
Binding: Ferlab.bio ValueSet/experimental-strategy (required)
.... extension:isPairedEnd 1..1 Extension Extension
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..0 Extension
Slice: Unordered, Open by value:url
..... url 1..1 uri "isPairedEnd"
..... value[x] 0..1 boolean Value of extension
.... extension:platform 1..1 Extension Extension
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..0 Extension
Slice: Unordered, Open by value:url
..... url 1..1 uri "platform"
..... value[x] 0..1 Coding Value of extension
Binding: Sequencing Experiment Platform (required)
.... extension:protocol 0..1 Extension Extension
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..0 Extension
Slice: Unordered, Open by value:url
..... url 1..1 uri "protocol"
..... value[x] 0..1 string Value of extension
.... extension:readLength 1..1 Extension Extension
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..0 Extension
Slice: Unordered, Open by value:url
..... url 1..1 uri "readLength"
..... value[x] 0..1 string Value of extension
.... extension:selection S 1..1 Extension Extension
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..0 Extension
Slice: Unordered, Open by value:url
..... url 1..1 uri "selection"
..... value[x] 0..1 Coding Value of extension
Binding: Sequencing Experiment Selection (required)
.... extension:source S 1..1 Extension Extension
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..0 Extension
Slice: Unordered, Open by value:url
..... url 1..1 uri "source"
..... value[x] 0..1 Coding Value of extension
Binding: Sequencing Experiment Source (required)
.... extension:targetCaptureKit 0..1 Extension Extension
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..0 Extension
Slice: Unordered, Open by value:url
..... url 1..1 uri "targetCaptureKit"
..... value[x] 0..1 string Value of extension
.... extension:targetLoci 0..1 Extension Extension
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..0 Extension
Slice: Unordered, Open by value:url
..... url 1..1 uri "targetLoci"
..... value[x] 0..1 string Value of extension
.... extension:runDates 0..* Extension Extension
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..0 Extension
Slice: Unordered, Open by value:url
..... url 1..1 uri "runDates"
..... value[x] 0..1 date Value of extension
.... extension:runIds 0..* Extension Extension
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..0 Extension
Slice: Unordered, Open by value:url
..... url 1..1 uri "runIds"
..... value[x] 0..1 string Value of extension
... url 1..1 uri "https://fhir.cqdg.ca/StructureDefinition/sequencingExperimentExtension"

doco Documentation for this format

This structure is derived from Extension

Summary

Complex Extension: Sequencing Experiment Extension

  • experimentalStrategy: Coding: An Extension
  • isPairedEnd: boolean: No description
  • platform: Coding: An Extension
  • protocol: string: No description
  • readLength: string: No description
  • selection: Coding: An Extension
  • source: Coding: An Extension
  • targetCaptureKit: string: No description
  • targetLoci: string: No description
  • runDates: date: An Extension
  • runIds: string: An Extension

 

Other representations of profile: CSV, Excel, Schematron

Terminology Bindings

Path Status Usage ValueSet Version Source
Extension.extension:experimentalStrategy.​value[x] Base required Ferlab.bio ValueSet/experimental-strategy 📦0.1.0 This IG
Extension.extension:platform.​value[x] Base required Sequencing Experiment Platform 📦0.1.0 This IG
Extension.extension:selection.​value[x] Base required Sequencing Experiment Selection 📦0.1.0 This IG
Extension.extension:source.​value[x] Base required Sequencing Experiment Source 📦0.1.0 This IG

Constraints

Id Grade Path(s) Description Expression
ele-1 error **ALL** elements All FHIR elements must have a @value or children hasValue() or (children().count() > id.count())
ext-1 error **ALL** extensions Must have either extensions or value[x], not both extension.exists() != value.exists()