CQDG Task

An example of a cqdg Observation (cause of death)

A condition in CQDG

A CQDG group

A CQDG group

An example of a cqdg group

A CQDG organization

An example of a cqdg Patient

A CQDG program

An example of a cqdg Specimen

A research study in CQDG

An example of a cqdg group

An example of a cqdg Observation (family relationship)

An example of a cqdg Observation (phenotype)

An example of a cqdg Observation Group

Extension for selected NCIT codes from NCI Thesaurus.

Limitation of access to studies.

Requirements to access to studies.

Patient's age (in days since birth) at the time of death

Patient's age (in days since birth) at the time of recruitment

Patient's age (in days since birth) at the time of death

cancer biospecimen anatomic location for cqdg project

Categories of data collected in this study (e.g. genomics, imaging…).

Overall design of study, including whether it is longitudinal and whether family members/unrelated controls are also enrolled.

Describes the data collection methods for the study.

dataset for cqdg project

dataset for cqdg project

Full Size Extension

gender for cqdg project

Population Info Extension

qc ethnicity for cqdg project

race for cqdg project

Research program metadata for Group resource

Contact details for a research program.

Partner details for a research program.

Represents a related artifact for a research program.

Sex at birth for cqdg project

tumor histological type for cqdg project

tumor normal designation for cqdg project

vital status for cqdg project

Sequencing Experiment Extension

Sequencing Experiment Extension

Workflow Extension

Is the study restricted (no publicly shared data on individuals)

ValueSet for specimen tissue source including NCIT and missing codes

ValueSet for Tumor Normal Designation including CQDG codes

Restriction on access

Requirements before access

This value set includes age at onset codes from Human Phenotype Ontology.

Bioinfo Analysis ValueSet

Cause of death

Observation ValueSet

Study ValueSet

Data Category ValueSet

Data Collection Method ValueSet

Date Type ValueSet

Diagnosis ValueSet

Disease Status ValueSet

Experimental Strategy ValueSet

Family Type ValueSet

File Format ValueSet

Gender ValueSet

Gender Collection Method ValueSet

Genome Build ValueSet

Phenotype ValueSet

Population ValueSet

QCEthnicity ValueSet

Race ValueSet

Race Collection Method ValueSet

Relationship To Proband ValueSet

Study Domain ValueSet

Sex At Birth ValueSet

Sex At Birth Collection Method ValueSet

Study Design ValueSet

Tumor Normal Designation ValueSet

Vital Status ValueSet

ValueSet for selected NCIT codes from NCI Thesaurus.

Sequencing Experiment Selection ValueSet

Sequencing Experiment Source ValueSet

Codes for missing specimen data

Codes for tumor normal designation

Age At Onset

Bioinformatics analysis code

Codes for cause of death

CQDG study dataset code system

CQDG Observation codes

CQDG study code system

Data category

Data category

Data Type

Disease status code system

Document format

DUO codes

Experimental strategy

Family type

This code system defines gender concepts used in Ferlab.bio, including options for man, woman, other genders, and various missing or unknown statuses.

This code system defines the possible methods by which a participant's gender information may be collected or recorded.

Genome build

Population

Classification of people living in Quebec in a named category of humans sharing a common history, geographic origin or nationality. The ethnic codes used to represent these concepts are based on a list provided by the genomic sequencing center

This code system defines standardized categories for documenting a participant's race within clinical and research datasets.

This code system defines standardized methods for collecting or recording a participant's race information in clinical and research settings.

Research domain

Library selection method

Sequencing experimental source

This code system defines standardized categories for documenting a participant's sex assigned at birth in clinical and research datasets.

This code system defines standardized methods for collecting or recording a participant's sex assigned at birth in clinical and research contexts.

Data category

Tumor normal designation

V3 role code

This code system defines standardized categories for documenting a participant's vital status in clinical and research datasets.

An example of a cqdg Observation (cause of death)

An example of a cqdg Observation (disease status)

An example of a cqdg Observation (family relationship)

An example of a cqdg Observation (phenotype)

An example of a cqdg Observation (tumor normal designation)

An example of a cqdg patient.

Document Reference Example1

Document Reference Example2

An example of a cqdg group

Organization Example

An example of a cqdg patient.

A Group resource example using the CQDG_Program profile

An example of a research study.

An example of a cqdg Task

An example of a specimen