0.1.0 - ci-build

CQDG_FHIR_IG - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

Artifacts Summary

This page provides a list of the FHIR artifacts defined as part of this implementation guide.

Structures: Resource Profiles

These define constraints on FHIR resources for systems conforming to this implementation guide.

Ferlab.bio Profile/cqdg-task

CQDG Task

Ferlab.bio StructureDefinition/cause-of-death

An example of a cqdg Observation (cause of death)

Ferlab.bio StructureDefinition/cqdg-condition

A condition in CQDG

Ferlab.bio StructureDefinition/cqdg-document-reference

A CQDG group

Ferlab.bio StructureDefinition/cqdg-group

A CQDG group

Ferlab.bio StructureDefinition/cqdg-observation

An example of a cqdg group

Ferlab.bio StructureDefinition/cqdg-organization

A CQDG organization

Ferlab.bio StructureDefinition/cqdg-patient

An example of a cqdg Patient

Ferlab.bio StructureDefinition/cqdg-specimen

An example of a cqdg Specimen

Ferlab.bio StructureDefinition/cqdg-study

A research study in CQDG

Ferlab.bio StructureDefinition/disease-status

An example of a cqdg group

Ferlab.bio StructureDefinition/phenotype

An example of a cqdg Observation (phenotype)

Ferlab.bio StructureDefinition/tumor-normal-designation

An example of a cqdg Observation Group

Structures: Extension Definitions

These define constraints on FHIR data types for systems conforming to this implementation guide.

Ferlab.bio Extension/access-limitations

Limitation of access to studies.

Ferlab.bio Extension/access-requirement

Requirements to access to studies.

Ferlab.bio Extension/age-at-event

Patient's age (in days since birth) at the time of death

Ferlab.bio Extension/age-at-recruitment

Patient's age (in days since birth) at the time of recruitment

Ferlab.bio Extension/age-of-death

Patient's age (in days since birth) at the time of death

Ferlab.bio Extension/data-category

Categories of data collected in this study (e.g. genomics, imaging…).

Ferlab.bio Extension/data-category

Overall design of study, including whether it is longitudinal and whether family members/unrelated controls are also enrolled.

Ferlab.bio Extension/data-collection-method

Describes the data collection methods for the study.

Ferlab.bio Extension/dataset

dataset for cqdg project

Ferlab.bio Extension/expectedStudyContent

dataset for cqdg project

Ferlab.bio Extension/full-size

Full Size Extension

Ferlab.bio Extension/population-info

Population Info Extension

Ferlab.bio Extension/qc-ethnicity

qc ethnicity for cqdg project

Ferlab.bio StructureDefinition/sequencing-experiment

Sequencing Experiment Extension

Ferlab.bio StructureDefinition/workflow

Workflow Extension

Restricted

Is the study restricted (no publicly shared data on individuals)

Terminology: Value Sets

These define sets of codes used by systems conforming to this implementation guide.

Ferlab.bio ValueSet/access-limitation

Restriction on access

Ferlab.bio ValueSet/access-requirement

Requirements before access

Ferlab.bio ValueSet/age-at-onset

This value set includes age at onset codes from Human Phenotype Ontology.

Ferlab.bio ValueSet/bioinfo-analysis

Bioinfo Analysis ValueSet

Ferlab.bio ValueSet/cause-of-death

Cause of death

Ferlab.bio ValueSet/cqdg-observation

Observation ValueSet

Ferlab.bio ValueSet/cqdg-study

Study ValueSet

Ferlab.bio ValueSet/data-category

Data Category ValueSet

Ferlab.bio ValueSet/data-collection-method

Data Collection Method ValueSet

Ferlab.bio ValueSet/data-type

Date Type ValueSet

Ferlab.bio ValueSet/diagnosis

Diagnosis ValueSet

Ferlab.bio ValueSet/disease-status

Disease Status ValueSet

Ferlab.bio ValueSet/experimental-strategy

Experimental Strategy ValueSet

Ferlab.bio ValueSet/family-type

Family Type ValueSet

Ferlab.bio ValueSet/file-format

File Format ValueSet

Ferlab.bio ValueSet/genome-build

Genome Build ValueSet

Ferlab.bio ValueSet/phenotype

Phenotype ValueSet

Ferlab.bio ValueSet/population

Population ValueSet

Ferlab.bio ValueSet/qa-ethnicity

QCEthnicity ValueSet

Ferlab.bio ValueSet/relationship-to-proband

Relationship To Proband ValueSet

Ferlab.bio ValueSet/research-domain

Study Domain ValueSet

Ferlab.bio ValueSet/sample-type-tissue-source

Sample Type Tissue Source ValueSet

Ferlab.bio ValueSet/study-design

Study Design ValueSet

Ferlab.bio ValueSet/tumor-normal-designation

Tumor Normal Designation ValueSet

Terminology: Code Systems

These define new code systems used by systems conforming to this implementation guide.

Ferlab.bio CodeSystem/age-at-onset

Age At Onset

Ferlab.bio CodeSystem/bioinformatics-analysis

Bioinformatics analysis code

Ferlab.bio CodeSystem/cause-of-death

Codes for cause of death

Ferlab.bio CodeSystem/cqdg-dataset

CQDG study dataset code system

Ferlab.bio CodeSystem/cqdg-observation

CQDG Observation codes

Ferlab.bio CodeSystem/cqdg-study

CQDG study code system

Ferlab.bio CodeSystem/data-category

Data category

Ferlab.bio CodeSystem/data-collection-method

Data category

Ferlab.bio CodeSystem/data-type

Data Type

Ferlab.bio CodeSystem/disease-status

Disease status code system

Ferlab.bio CodeSystem/document-format

Document format

Ferlab.bio CodeSystem/duo-codes

DUO codes

Ferlab.bio CodeSystem/experimental-strategy

Experimental strategy

Ferlab.bio CodeSystem/family-type

Family type

Ferlab.bio CodeSystem/genome-build

Genome build

Ferlab.bio CodeSystem/population

Population

Ferlab.bio CodeSystem/qc-ethnicity

Classification of people living in Quebec in a named category of humans sharing a common history, geographic origin or nationality. The ethnic codes used to represent these concepts are based on a list provided by the genomic sequencing center

Ferlab.bio CodeSystem/research-domain

Research domain

Ferlab.bio CodeSystem/sample-type

Qc sample type

Ferlab.bio CodeSystem/study-design

Data category

Ferlab.bio CodeSystem/tumor-normal-designation

Tumor normal designation

Ferlab.bio CodeSystem/v3-roles

V3 role code

Example: Example Instances

These are example instances that show what data produced and consumed by systems conforming with this implementation guide might look like.

Ferlab.bio Example/cqdg-condition

An example of a cqdg patient.

Ferlab.bio Example/cqdg-document-reference1

Document Reference Example1

Ferlab.bio Example/cqdg-document-reference2

Document Reference Example2

Ferlab.bio Example/cqdg-group

An example of a cqdg group

Ferlab.bio Example/cqdg-organization

Organization Example

Ferlab.bio Example/cqdg-patient

An example of a cqdg patient.

Ferlab.bio Example/cqdg-study

An example of a research study.

Ferlab.bio Example/cqdg-task

An example of a cqdg Task

Ferlab.bio Example/disease-status

An example of a cqdg Observation (disease)

Ferlab.bio Example/phenotype

An example of a cqdg Observation (phenotype)

Ferlab.bio Example/specimen1

An example of a specimen

Ferlab.bio Example/specimen2

An example of a specimen