Validation Results for CQDG_FHIR_IG

Generated Wed Oct 02 15:05:50 UTC 2024, FHIR version 4.0.1 for fhir.cqdg#0.1.0 (canonical = https://fhir.cqdg.ca (history)). See Full QA Report

Quality Checks
Publisher Version:IG Publisher Version: v1.6.28
Publication Code:n/a . PackageId = fhir.cqdg, Canonical = https://fhir.cqdg.ca
Realm Check for n/a:
  • n/a
Publication Request:
  • Error fetching package-list from https://fhir.cqdg.ca: null
  • No publication request found
Supressed Messages:3 Suppressed Issues
Dependency Checks:
PackageVersionFHIRCanonicalWeb BaseComment
.. fhir.cqdg0.1.0R4https://fhir.cqdg.ca
... hl7.terminology.r46.0.2 MR4http://terminology.hl7.orghttp://terminology.hl7.org/6.0.2
... hl7.fhir.uv.extensions.r45.1.0 MR4http://hl7.org/fhir/extensionshttp://hl7.org/fhir/extensions/5.1.0
... hl7.fhir.ca.baseline1.0.2 UR4http://hl7.org/fhir/ca/baseline/ImplementationGuide/hl7.fhir.ca.baselinehttp://hl7.org/fhir/ca/baseline/ImplementationGuide/hl7.fhir.ca.baseline
.... hl7.fhir.uv.ips1.0.0 OR4http://hl7.org/fhir/uv/ipshttp://hl7.org/fhir/uv/ips/STU1Latest Release is 1.1.0
Templates: fhir.base.template#current. Tools: 0.2.0
Dependent IGs:no references
Global Profiles:(none declared)
Terminology Server(s):http://tx.fhir.org/r4 (details)
HTA Analysis:Non-HL7 Igs are exempt from terminology dependency analysis
R5 Dependencies:(none)
Draft Dependencies:
Modifier Extensions:(none)
Previous Version Comparison: Unable to compare with previous version: Unable to find version history at https://fhir.cqdg.ca (Problem #1 with package-list.json at https://fhir.cqdg.ca: null)
IPA Comparison: n/a
IPS Comparison: n/a
Validation Flags: On: autoLoad; Off: hintAboutNonMustSupport, anyExtensionsAllowed, checkAggregation, showReferenceMessages, noExperimentalContent, displayWarnings
Summary: errors = 30, warn = 76, info = 14, broken links = 20
FilenameErrorsWarningsHints
Build Errors2040
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-age-at-onset200
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-duo-codes200
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-qc-sample-type200
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/Condition-ConditionExample131
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/DocumentReference-DocumentReferenceExample1422
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/DocumentReference-DocumentReferenceExample2022
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/Group-CQDGGroupExample020
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/Observation-ObsDiseaseStatExample030
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/Observation-ObsPhenotypeExample020
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/Organization-OrganizationExample010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/Patient-PatientExample210
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ResearchStudy-ResearchStudyExample087
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/Specimen-SpecimenExample311
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/Specimen-SpecimenExample2111
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-AccessLimitations010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-AccessRequirements010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-CQDGObservationCauseOfDeath110
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-CQDGObservationPhenotype400
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-CQDGObservationTumorNormalDesignation110
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-DataCategoryExtension010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-DataCollectionMethodExtension010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-FullSizeExtension010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-QCEthnicity010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-Restricted010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-StudyDesignExtension010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-cqdg-document-reference010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-cqdg-observation-group010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-cqdg-organization010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-cqdg-task010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-datasetExtension310
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-expectedStudyContent310
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-population-info020
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-sequencingExperimentExtension010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-workflowExtension010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/Task-CQDGTaskExample110
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-access-limitation-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-access-requirement-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-age-at-onset-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-bioinfo-analysis-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-cause-of-death-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-cqdg-diagnosis-vs020
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-cqdg-observation-category010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-data-category-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-data-collection-method-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-data-type-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-disease-status-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-experimental-strategy-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-family-type-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-file-format010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-genome-build-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-phenotype-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-population-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-qc-ethnicity-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-relationship-to-proband010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-research-domain-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-sample-type-tissue-source-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-study-design-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-study-vs010
/home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/ValueSet-tumor-normal-designation-vs010

n/a Show Validation Information

output​/StructureDefinition-CQDGObservationCauseOfDeath-definitions​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/span​/a at Line 230, column 1590errorThe link 'https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs' for "https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationCauseOfDeath-definitions​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/span​/a at Line 441, column 295errorThe link 'https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs' for "https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationCauseOfDeath​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 321, column 269errorThe link 'https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs' for "https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationCauseOfDeath​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 329, column 178errorThe link 'https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs' for "https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationCauseOfDeath​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 807, column 237errorThe link 'https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs' for "https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationCauseOfDeath​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 1104, column 178errorThe link 'https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs' for "https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationCauseOfDeath​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 1325, column 269errorThe link 'https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs' for "https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationCauseOfDeath​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 1332, column 178errorThe link 'https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs' for "https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationCauseOfDeath​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 1810, column 237errorThe link 'https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs' for "https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationCauseOfDeath​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 2107, column 178errorThe link 'https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs' for "https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationTumorNormalDesignation-definitions​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/span​/a at Line 230, column 1590errorThe link 'https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs' for "https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationTumorNormalDesignation-definitions​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/span​/a at Line 441, column 295errorThe link 'https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs' for "https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationTumorNormalDesignation​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 321, column 269errorThe link 'https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs' for "https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationTumorNormalDesignation​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 329, column 178errorThe link 'https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs' for "https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationTumorNormalDesignation​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 807, column 237errorThe link 'https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs' for "https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationTumorNormalDesignation​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 1104, column 178errorThe link 'https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs' for "https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationTumorNormalDesignation​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 1325, column 269errorThe link 'https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs' for "https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationTumorNormalDesignation​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 1332, column 178errorThe link 'https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs' for "https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationTumorNormalDesignation​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 1810, column 237errorThe link 'https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs' for "https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs" cannot be resolved
output​/StructureDefinition-CQDGObservationTumorNormalDesignation​.html​#​/html​/body​/div​/div​/div​/div​/div​/div​/div​/div​/div​/table​/tr​/td​/a at Line 2107, column 178errorThe link 'https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs' for "https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs" cannot be resolved
1warningThe HTML fragment 'ip-statements.xhtml' is not included anywhere in the produced implementation guide
2warningAn HTML fragment from the set [cross-version-analysis.xhtml, cross-version-analysis-inline.xhtml] is not included anywhere in the produced implementation guide
3warningAn HTML fragment from the set [dependency-table.xhtml, dependency-table-short.xhtml] is not included anywhere in the produced implementation guide
4warningThe HTML fragment 'globals-table.xhtml' is not included anywhere in the produced implementation guide

fsh-generated/resources/CodeSystem-age-at-onset.json Show Validation Information (1)

PathSeverityMessage
CodeSystem​.where(url = 'http:​/​/purl​.obolibrary​.org​/obo​/hp​.owl')errorConformance resource /home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-age-at-onset.json - the canonical URL (https://fhir.cqdg.ca/CodeSystem/age-at-onset) does not match the URL (http://purl.obolibrary.org/obo/hp.owl)
fsh-generated​/resources​/CodeSystem-age-at-onseterrorURL Mismatch https://fhir.cqdg.ca/CodeSystem/age-at-onset vs http://purl.obolibrary.org/obo/hp.owl

fsh-generated/resources/CodeSystem-duo-codes.json Show Validation Information (1)

PathSeverityMessage
CodeSystem​.where(url = 'http:​/​/purl​.obolibrary​.org​/obo​/duo​.owl')errorConformance resource /home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-duo-codes.json - the canonical URL (https://fhir.cqdg.ca/CodeSystem/duo-codes) does not match the URL (http://purl.obolibrary.org/obo/duo.owl)
fsh-generated​/resources​/CodeSystem-duo-codeserrorURL Mismatch https://fhir.cqdg.ca/CodeSystem/duo-codes vs http://purl.obolibrary.org/obo/duo.owl

fsh-generated/resources/CodeSystem-qc-sample-type.json Show Validation Information (1)

PathSeverityMessage
CodeSystem​.where(url = 'http:​/​/purl​.obolibrary​.org​/obo​/ncit​.owl')errorConformance resource /home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-qc-sample-type.json - the canonical URL (https://fhir.cqdg.ca/CodeSystem/qc-sample-type) does not match the URL (http://purl.obolibrary.org/obo/ncit.owl)
fsh-generated​/resources​/CodeSystem-qc-sample-typeerrorURL Mismatch https://fhir.cqdg.ca/CodeSystem/qc-sample-type vs http://purl.obolibrary.org/obo/ncit.owl

fsh-generated/resources/Condition-ConditionExample.json Show Validation Information (1)

PathSeverityMessage
Condition.meta.tag[0] (l6/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
Condition (l1/c2)errorThe extension https://fhir.cqdg.ca/StructureDefinition/AgeAtEvent is not allowed to be used at this point (allowed = e:ClinicalImpression; this element is [Condition])
Condition.code.coding[0] (l36/c4)warningCoding has no system. A code with no system has no defined meaning, and it cannot be validated. A system should be provided
Condition​.code​.coding[1]​.system (l36​/c4)warningA definition for CodeSystem 'http://purl.obolibrary.org/obo/mondo.owl' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4)
Condition​.stage[0]​.summary​.coding[0]​.code (l51​/c8)informationThe code '254293002' is valid but is not active (from http://tx.fhir.org/r4)

fsh-generated/resources/DocumentReference-DocumentReferenceExample1.json Show Validation Information (1)

PathSeverityMessage
DocumentReference.meta.tag[0] (l6/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
DocumentReference​.meta​.tag[1]​.code (l9​/c8)errorUnknown code 'dataset: ds_name 1' in the CodeSystem 'https://fhir.cqdg.ca/CodeSystem/cqdg-dataset-cs' version '0.1.0'
DocumentReference​.type​.coding[0]​.display (l43​/c4)errorWrong Display Name 'Sequencing Data Supplement' for https://fhir.cqdg.ca/CodeSystem/data-type#Sequencing-data-supplement. Valid display is one of 2 choices: 'Supplement' or 'Supplement' (null) (for the language(s) 'en')
DocumentReference.type (l43/c4)informationNone of the codings provided are in the value set 'Document Type Value Set' (http://hl7.org/fhir/ValueSet/c80-doc-typecodes|4.0.1), and a coding is recommended to come from this value set (codes = https://fhir.cqdg.ca/CodeSystem/data-type#Sequencing-data-supplement)
DocumentReference​.securityLabel[0]​.coding[0] (l34​/c6)warningCoding has no system. A code with no system has no defined meaning, and it cannot be validated. A system should be provided (from http://tx.fhir.org/r4, see log)
DocumentReference​.content[0]​.attachment​.extension[0] (l19​/c12)errorConstraint failed: ext-1: 'Must have either extensions or value[x], not both' (defined in http://hl7.org/fhir/StructureDefinition/Extension)
DocumentReference​.content[0]​.attachment​.extension[0] (l19​/c12)errorThe Extension 'https://fhir.cqdg.ca/StructureDefinition/FullSizeExtension' definition is for a simple extension, so it must contain a value
DocumentReference​.content[0]​.format (l26​/c8)informationThe Coding provided (https://fhir.cqdg.ca/CodeSystem/document-format#TGZ) was not found in the value set 'DocumentReference Format Code Set' (http://hl7.org/fhir/ValueSet/formatcodes|4.0.1), and a code is recommended to come from this value set. (error message = The provided code 'https://fhir.cqdg.ca/CodeSystem/document-format#TGZ: 'TGZ Archive File'' was not found in the value set 'http://hl7.org/fhir/ValueSet/formatcodes|4.0.1')

fsh-generated/resources/DocumentReference-DocumentReferenceExample2.json Show Validation Information (1)

PathSeverityMessage
DocumentReference.meta.tag[0] (l6/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
DocumentReference.type (l40/c4)informationNone of the codings provided are in the value set 'Document Type Value Set' (http://hl7.org/fhir/ValueSet/c80-doc-typecodes|4.0.1), and a coding is recommended to come from this value set (codes = https://fhir.cqdg.ca/CodeSystem/data-type#Aligned-reads)
DocumentReference​.securityLabel[0]​.coding[0] (l31​/c6)warningCoding has no system. A code with no system has no defined meaning, and it cannot be validated. A system should be provided (from http://tx.fhir.org/r4, see log)
DocumentReference​.content[0]​.format (l23​/c8)informationThe Coding provided (https://fhir.cqdg.ca/CodeSystem/document-format#TGZ) was not found in the value set 'DocumentReference Format Code Set' (http://hl7.org/fhir/ValueSet/formatcodes|4.0.1), and a code is recommended to come from this value set. (error message = The provided code 'https://fhir.cqdg.ca/CodeSystem/document-format#TGZ: 'TGZ Archive File'' was not found in the value set 'http://hl7.org/fhir/ValueSet/formatcodes|4.0.1')

fsh-generated/resources/Group-CQDGGroupExample.json Show Validation Information (1)

PathSeverityMessage
Group.meta.tag[0] (l6/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
Group.code.coding[0] (l22/c4)warningCoding has no system. A code with no system has no defined meaning, and it cannot be validated. A system should be provided

fsh-generated/resources/Observation-ObsDiseaseStatExample.json Show Validation Information (1)

PathSeverityMessage
Observation (l1/c2)warningBest Practice Recommendation: In general, all observations should have a subject
Observation (l1/c2)warningBest Practice Recommendation: In general, all observations should have a performer
Observation (l1/c2)warningBest Practice Recommendation: In general, all observations should have an effective[x] ()

fsh-generated/resources/Observation-ObsPhenotypeExample.json Show Validation Information (1)

PathSeverityMessage
Observation (l1/c2)warningBest Practice Recommendation: In general, all observations should have a performer
Observation (l1/c2)warningBest Practice Recommendation: In general, all observations should have an effective[x] ()

fsh-generated/resources/Organization-OrganizationExample.json Show Validation Information (1)

PathSeverityMessage
Organization.meta.tag[0] (l6/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided

fsh-generated/resources/Patient-PatientExample.json Show Validation Information (1)

PathSeverityMessage
Patient.meta.tag[0] (l6/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
Patient (l1/c2)errorThe extension https://fhir.cqdg.ca/StructureDefinition/AgeAtRecruitment is not allowed to be used at this point (allowed = e:ClinicalImpression; this element is [Patient])
Patient (l1/c2)errorThe extension https://fhir.cqdg.ca/StructureDefinition/AgeOfDeath is not allowed to be used at this point (allowed = e:ClinicalImpression; this element is [Patient])

fsh-generated/resources/ResearchStudy-ResearchStudyExample.json Show Validation Information (4)

PathSeverityMessage
ResearchStudy.identifier[1] (l191/c6)Slicing InformationThis element does not match any known slice defined in the profile https://fhir.cqdg.ca/StructureDefinition/cqdg-research-study|0.1.0 (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning
ResearchStudy​.extension[0]​.value​.ofType(CodeableConcept) (l13​/c8)Slicing InformationThis element does not match any known slice defined in the profile https://fhir.cqdg.ca/StructureDefinition/DataCategoryExtension|0.1.0 (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning
ResearchStudy​.extension[1]​.value​.ofType(CodeableConcept) (l24​/c8)Slicing InformationThis element does not match any known slice defined in the profile https://fhir.cqdg.ca/StructureDefinition/StudyDesignExtension|0.1.0 (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning
ResearchStudy​.extension[2]​.value​.ofType(CodeableConcept) (l35​/c8)Slicing InformationThis element does not match any known slice defined in the profile https://fhir.cqdg.ca/StructureDefinition/DataCollectionMethodExtension|0.1.0 (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning
ResearchStudy​.extension[4]​.value​.ofType(Coding) (l50​/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
ResearchStudy​.extension[5]​.value​.ofType(Coding) (l57​/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
ResearchStudy​.extension[6]​.value​.ofType(Coding) (l64​/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
ResearchStudy​.extension[7]​.value​.ofType(Coding) (l71​/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
ResearchStudy​.extension[8]​.value​.ofType(Coding) (l78​/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
ResearchStudy​.extension[9]​.value​.ofType(Coding) (l85​/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
ResearchStudy​.extension[10]​.value​.ofType(Coding) (l92​/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
ResearchStudy​.extension[14]​.value​.ofType(CodeableConcept) (l154​/c8)Slicing InformationThis element does not match any known slice defined in the profile https://fhir.cqdg.ca/StructureDefinition/DataCategoryExtension|0.1.0 (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning
ResearchStudy​.extension[15]​.value​.ofType(CodeableConcept) (l165​/c8)Slicing InformationThis element does not match any known slice defined in the profile https://fhir.cqdg.ca/StructureDefinition/StudyDesignExtension|0.1.0 (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning
ResearchStudy​.extension[16]​.value​.ofType(CodeableConcept) (l176​/c8)Slicing InformationThis element does not match any known slice defined in the profile https://fhir.cqdg.ca/StructureDefinition/DataCollectionMethodExtension|0.1.0 (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning
ResearchStudy​.category[0]​.coding[0]​.system (l211​/c6)warningA definition for CodeSystem 'https://fhir.cqdg.ca/CodeSystem/study-domain' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4)

fsh-generated/resources/Specimen-SpecimenExample.json Show Validation Information (1)

PathSeverityMessage
Specimen.identifier[1] (l19/c6)Slicing InformationThis element does not match any known slice defined in the profile https://fhir.cqdg.ca/StructureDefinition/cqdg-specimen|0.1.0 (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning
Specimen.meta.tag[0] (l6/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
Specimen (l1/c2)errorThe extension https://fhir.cqdg.ca/StructureDefinition/AgeAtEvent is not allowed to be used at this point (allowed = e:ClinicalImpression; this element is [Specimen])
Specimen​.type​.coding[0]​.display (l40​/c4)errorWrong Display Name 'DNA' for http://purl.obolibrary.org/obo/ncit.owl#NCIT:C12434. Valid display is 'Blood' (for the language(s) 'en')
Specimen​.type​.coding[0]​.system (l43​/c60)errorThe value provided ('http://purl.obolibrary.org/obo/ncit.owl') was not found in the value set 'Ferlab.bio ValueSet/sample-type-tissue-source' (https://fhir.cqdg.ca/ValueSet/sample-type-tissue-source-vs|0.1.0), and a code is required from this value set (error message = The System URI could not be determined for the code 'http://purl.obolibrary.org/obo/ncit.owl' in the ValueSet 'https://fhir.cqdg.ca/ValueSet/sample-type-tissue-source-vs|0.1.0'; The provided code '#http://purl.obolibrary.org/obo/ncit.owl' was not found in the value set 'https://fhir.cqdg.ca/ValueSet/sample-type-tissue-source-vs|0.1.0')

fsh-generated/resources/Specimen-SpecimenExample2.json Show Validation Information (1)

PathSeverityMessage
Specimen.identifier[1] (l19/c6)Slicing InformationThis element does not match any known slice defined in the profile https://fhir.cqdg.ca/StructureDefinition/cqdg-specimen|0.1.0 (this may not be a problem, but you should check that it's not intended to match a slice) Show Reasoning
Specimen.meta.tag[0] (l6/c8)warningA code with no system has no defined meaning, and it cannot be validated. A system should be provided
Specimen (l1/c2)errorThe extension https://fhir.cqdg.ca/StructureDefinition/AgeAtEvent is not allowed to be used at this point (allowed = e:ClinicalImpression; this element is [Specimen])

fsh-generated/resources/StructureDefinition-AccessLimitations.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.context[0]warningReview the extension type for AccessLimitations: extensions should not have a context of Element unless it's really intended that they can be used anywhere

fsh-generated/resources/StructureDefinition-AccessRequirements.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.context[0]warningReview the extension type for AccessRequirements: extensions should not have a context of Element unless it's really intended that they can be used anywhere

fsh-generated/resources/StructureDefinition-CQDGObservationCauseOfDeath.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.where(url = 'https:​/​/fhir​.cqdg​.ca​/StructureDefinition​/CQDGObservationCauseOfDeath')warningThe Implementation Guide contains no examples for this profile
StructureDefinition.text.diverrorHyperlink 'https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs' at 'div/table/tr/td/a' for 'https://fhir.cqdg.ca/CodeSystem/cause-of-death-vs' does not resolve

fsh-generated/resources/StructureDefinition-CQDGObservationPhenotype.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.snapshot​.element[36]​.binding​.valueSet (l1​/c70215)errorCanonical URL 'http://purl.obolibrary.org/obo/hp.owl' refers to a resource that has the wrong type. Found CodeSystem expecting one of [ValueSet]
StructureDefinition​.differential​.element[3]​.binding​.valueSet (l1​/c119098)errorCanonical URL 'http://purl.obolibrary.org/obo/hp.owl' refers to a resource that has the wrong type. Found CodeSystem expecting one of [ValueSet]
StructureDefinition​.differential​.element[3]​.bindingerrorThe valueSet reference http://purl.obolibrary.org/obo/hp.owl on element Observation.value[x].coding.system points to something that is not a value set (CodeSystem)
StructureDefinition​.snapshot​.element[36]​.bindingerrorThe valueSet reference http://purl.obolibrary.org/obo/hp.owl on element Observation.value[x].coding.system points to something that is not a value set (CodeSystem)

fsh-generated/resources/StructureDefinition-CQDGObservationTumorNormalDesignation.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.where(url = 'https:​/​/fhir​.cqdg​.ca​/StructureDefinition​/CQDGObservationTumorNormalDesignation')warningThe Implementation Guide contains no examples for this profile
StructureDefinition.text.diverrorHyperlink 'https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs' at 'div/table/tr/td/a' for 'https://fhir.cqdg.ca/CodeSystem/tumor-normal-designation-vs' does not resolve

fsh-generated/resources/StructureDefinition-DataCategoryExtension.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.context[0]warningReview the extension type for DataCategoryExtension: extensions should not have a context of Element unless it's really intended that they can be used anywhere

fsh-generated/resources/StructureDefinition-DataCollectionMethodExtension.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.context[0]warningReview the extension type for DataCollectionMethodExtension: extensions should not have a context of Element unless it's really intended that they can be used anywhere

fsh-generated/resources/StructureDefinition-FullSizeExtension.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.context[0]warningReview the extension type for FullSizeExtension: extensions should not have a context of Element unless it's really intended that they can be used anywhere

fsh-generated/resources/StructureDefinition-QCEthnicity.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.context[0]warningReview the extension type for QCEthnicity: extensions should not have a context of Element unless it's really intended that they can be used anywhere

fsh-generated/resources/StructureDefinition-Restricted.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.context[0]warningReview the extension type for Restricted: extensions should not have a context of Element unless it's really intended that they can be used anywhere

fsh-generated/resources/StructureDefinition-StudyDesignExtension.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.context[0]warningReview the extension type for StudyDesignExtension: extensions should not have a context of Element unless it's really intended that they can be used anywhere

fsh-generated/resources/StructureDefinition-cqdg-document-reference.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.where(url = 'https:​/​/fhir​.cqdg​.ca​/StructureDefinition​/cqdg-document-reference')warningThe Implementation Guide contains no examples for this profile

fsh-generated/resources/StructureDefinition-cqdg-observation-group.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.where(url = 'https:​/​/fhir​.cqdg​.ca​/StructureDefinition​/cqdg-observation-group')warningThe Implementation Guide contains no examples for this profile

fsh-generated/resources/StructureDefinition-cqdg-organization.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.where(url = 'https:​/​/fhir​.cqdg​.ca​/StructureDefinition​/cqdg-organization')warningThe Implementation Guide contains no examples for this profile

fsh-generated/resources/StructureDefinition-cqdg-task.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.where(url = 'https:​/​/fhir​.cqdg​.ca​/StructureDefinition​/cqdg-task')warningThe Implementation Guide contains no examples for this profile

fsh-generated/resources/StructureDefinition-datasetExtension.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.where(url = 'https:​/​/fhir​.cqdg​.ca​/StructureDefinition​/dataset')errorConformance resource /home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-datasetExtension.json - the canonical URL (https://fhir.cqdg.ca/StructureDefinition/datasetExtension) does not match the URL (https://fhir.cqdg.ca/StructureDefinition/dataset)
StructureDefinition.urlerrorResource id/url mismatch: datasetExtension/https://fhir.cqdg.ca/StructureDefinition/dataset
StructureDefinition.context[0]warningReview the extension type for datasetExtension: extensions should not have a context of Element unless it's really intended that they can be used anywhere
fsh-generated​/resources​/StructureDefinition-datasetExtensionerrorURL Mismatch https://fhir.cqdg.ca/StructureDefinition/datasetExtension vs https://fhir.cqdg.ca/StructureDefinition/dataset

fsh-generated/resources/StructureDefinition-expectedStudyContent.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition​.where(url = 'https:​/​/fhir​.cqdg​.ca​/StructureDefinition​/ResearchStudy​/ExpectedContent')errorConformance resource /home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-expectedStudyContent.json - the canonical URL (https://fhir.cqdg.ca/StructureDefinition/expectedStudyContent) does not match the URL (https://fhir.cqdg.ca/StructureDefinition/ResearchStudy/ExpectedContent)
StructureDefinition.urlerrorResource id/url mismatch: expectedStudyContent/https://fhir.cqdg.ca/StructureDefinition/ResearchStudy/ExpectedContent
StructureDefinition.context[0]warningReview the extension type for expectedStudyContent: extensions should not have a context of Element unless it's really intended that they can be used anywhere
fsh-generated​/resources​/StructureDefinition-expectedStudyContenterrorURL Mismatch https://fhir.cqdg.ca/StructureDefinition/expectedStudyContent vs https://fhir.cqdg.ca/StructureDefinition/ResearchStudy/ExpectedContent

fsh-generated/resources/StructureDefinition-population-info.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.context[0]warningReview the extension type for population-info: extensions should not have a context of Element unless it's really intended that they can be used anywhere
StructureDefinition​.where(url = 'https:​/​/fhir​.cqdg​.ca​/StructureDefinition​/population-info')warningThe Implementation Guide contains no examples for this extension

fsh-generated/resources/StructureDefinition-sequencingExperimentExtension.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.context[0]warningReview the extension type for sequencingExperimentExtension: extensions should not have a context of Element unless it's really intended that they can be used anywhere

fsh-generated/resources/StructureDefinition-workflowExtension.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.context[0]warningReview the extension type for workflowExtension: extensions should not have a context of Element unless it's really intended that they can be used anywhere

fsh-generated/resources/Task-CQDGTaskExample.json Show Validation Information (1)

PathSeverityMessage
Task​.output[3]​.type​.coding[0]​.display (l146​/c8)errorWrong Display Name 'Sequencing-data-supplement' for https://fhir.cqdg.ca/CodeSystem/data-type#Sequencing-data-supplement. Valid display is one of 2 choices: 'Supplement' or 'Supplement' (null) (for the language(s) 'en')
Task.meta.profile[0] (l1/c2)warningProfile reference 'https://fhir.cqdg.ca/StructureDefinition/cqgc-analysis-task' has not been checked because it could not be found, and the validator is set to not fetch unknown profiles

fsh-generated/resources/ValueSet-access-limitation-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c951)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-access-requirement-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c963)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-age-at-onset-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c1012)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-bioinfo-analysis-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c988)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-cause-of-death-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c957)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-cqdg-diagnosis-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c1174)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present
ValueSet​.where(id = 'cqdg-diagnosis-vs')warningError from http://tx.fhir.org/r4: Unable to provide support for code system http://purl.obolibrary.org/obo/mondo.owl (from , see log)

fsh-generated/resources/ValueSet-cqdg-observation-category.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c1025)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-data-category-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c937)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-data-collection-method-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c1044)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-data-type-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c889)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-disease-status-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c949)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-experimental-strategy-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c1027)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-family-type-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c913)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-file-format.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c905)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-genome-build-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c925)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-phenotype-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c885)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-population-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c902)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-qc-ethnicity-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c924)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-relationship-to-proband.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c1003)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-research-domain-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c956)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-sample-type-tissue-source-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c1032)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-study-design-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c925)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-study-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c871)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

fsh-generated/resources/ValueSet-tumor-normal-designation-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSet (l1/c1068)warningPublished value sets SHOULD conform to the ShareableValueSet profile, which says that the element ValueSet.experimental is mandatory, but it is not present

Suppressed Messages (Warnings, hints, broken links)

See https://github.com/FHIR/sample-ig/blob/master/input/ignoreWarnings.txt for examples

Errors sorted by type


All_observations_should_have_a_performer

fsh-generated/resources/Observation-ObsDiseaseStatExample.jsonBest Practice Recommendation: In general, all observations should have a performer
fsh-generated/resources/Observation-ObsPhenotypeExample.jsonBest Practice Recommendation: In general, all observations should have a performer

All_observations_should_have_a_subject

fsh-generated/resources/Observation-ObsDiseaseStatExample.jsonBest Practice Recommendation: In general, all observations should have a subject

All_observations_should_have_an_effectiveDateTime_or_an_effectivePeriod

fsh-generated/resources/Observation-ObsDiseaseStatExample.jsonBest Practice Recommendation: In general, all observations should have an effective[x] ()
fsh-generated/resources/Observation-ObsPhenotypeExample.jsonBest Practice Recommendation: In general, all observations should have an effective[x] ()

Extension_EXTP_Context_Wrong

fsh-generated/resources/Condition-ConditionExample.jsonThe extension https://fhir.cqdg.ca/StructureDefinition/AgeAtEvent is not allowed to be used at this point (allowed = e:ClinicalImpression; this element is [Condition])
fsh-generated/resources/Patient-PatientExample.jsonThe extension https://fhir.cqdg.ca/StructureDefinition/AgeAtRecruitment is not allowed to be used at this point (allowed = e:ClinicalImpression; this element is [Patient])
fsh-generated/resources/Patient-PatientExample.jsonThe extension https://fhir.cqdg.ca/StructureDefinition/AgeOfDeath is not allowed to be used at this point (allowed = e:ClinicalImpression; this element is [Patient])
fsh-generated/resources/Specimen-SpecimenExample.jsonThe extension https://fhir.cqdg.ca/StructureDefinition/AgeAtEvent is not allowed to be used at this point (allowed = e:ClinicalImpression; this element is [Specimen])
fsh-generated/resources/Specimen-SpecimenExample2.jsonThe extension https://fhir.cqdg.ca/StructureDefinition/AgeAtEvent is not allowed to be used at this point (allowed = e:ClinicalImpression; this element is [Specimen])

Extension_EXT_Simple_ABSENT

fsh-generated/resources/DocumentReference-DocumentReferenceExample1.jsonThe Extension 'https://fhir.cqdg.ca/StructureDefinition/FullSizeExtension' definition is for a simple extension, so it must contain a value

RESOURCE_CANONICAL_MISMATCH

fsh-generated/resources/CodeSystem-age-at-onset.jsonConformance resource /home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-age-at-onset.json - the canonical URL (https://fhir.cqdg.ca/CodeSystem/age-at-onset) does not match the URL (http://purl.obolibrary.org/obo/hp.owl)
fsh-generated/resources/CodeSystem-duo-codes.jsonConformance resource /home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-duo-codes.json - the canonical URL (https://fhir.cqdg.ca/CodeSystem/duo-codes) does not match the URL (http://purl.obolibrary.org/obo/duo.owl)
fsh-generated/resources/CodeSystem-qc-sample-type.jsonConformance resource /home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/CodeSystem-qc-sample-type.json - the canonical URL (https://fhir.cqdg.ca/CodeSystem/qc-sample-type) does not match the URL (http://purl.obolibrary.org/obo/ncit.owl)
fsh-generated/resources/StructureDefinition-datasetExtension.jsonConformance resource /home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-datasetExtension.json - the canonical URL (https://fhir.cqdg.ca/StructureDefinition/datasetExtension) does not match the URL (https://fhir.cqdg.ca/StructureDefinition/dataset)
fsh-generated/resources/StructureDefinition-expectedStudyContent.jsonConformance resource /home/runner/work/cqdg-FHIR/cqdg-FHIR/fsh-generated/resources/StructureDefinition-expectedStudyContent.json - the canonical URL (https://fhir.cqdg.ca/StructureDefinition/expectedStudyContent) does not match the URL (https://fhir.cqdg.ca/StructureDefinition/ResearchStudy/ExpectedContent)

RESOURCE_ID_MISMATCH

fsh-generated/resources/StructureDefinition-datasetExtension.jsonResource id/url mismatch: datasetExtension/https://fhir.cqdg.ca/StructureDefinition/dataset
fsh-generated/resources/StructureDefinition-expectedStudyContent.jsonResource id/url mismatch: expectedStudyContent/https://fhir.cqdg.ca/StructureDefinition/ResearchStudy/ExpectedContent

SD_ED_BIND_NOT_VS

fsh-generated/resources/StructureDefinition-CQDGObservationPhenotype.jsonThe valueSet reference http://purl.obolibrary.org/obo/hp.owl on element Observation.value[x].coding.system points to something that is not a value set (CodeSystem)
fsh-generated/resources/StructureDefinition-CQDGObservationPhenotype.jsonThe valueSet reference http://purl.obolibrary.org/obo/hp.owl on element Observation.value[x].coding.system points to something that is not a value set (CodeSystem)

TERMINOLOGY_TX_SYSTEM_NO_CODE

fsh-generated/resources/Condition-ConditionExample.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/DocumentReference-DocumentReferenceExample1.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/DocumentReference-DocumentReferenceExample2.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/Group-CQDGGroupExample.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/Organization-OrganizationExample.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/Patient-PatientExample.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/ResearchStudy-ResearchStudyExample.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/ResearchStudy-ResearchStudyExample.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/ResearchStudy-ResearchStudyExample.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/ResearchStudy-ResearchStudyExample.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/ResearchStudy-ResearchStudyExample.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/ResearchStudy-ResearchStudyExample.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/ResearchStudy-ResearchStudyExample.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/Specimen-SpecimenExample.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided
fsh-generated/resources/Specimen-SpecimenExample2.jsonA code with no system has no defined meaning, and it cannot be validated. A system should be provided

TYPE_SPECIFIC_CHECKS_DT_CANONICAL_TYPE

fsh-generated/resources/StructureDefinition-CQDGObservationPhenotype.jsonCanonical URL 'http://purl.obolibrary.org/obo/hp.owl' refers to a resource that has the wrong type. Found CodeSystem expecting one of [ValueSet]
fsh-generated/resources/StructureDefinition-CQDGObservationPhenotype.jsonCanonical URL 'http://purl.obolibrary.org/obo/hp.owl' refers to a resource that has the wrong type. Found CodeSystem expecting one of [ValueSet]

Terminology_TX_NoValid_14

fsh-generated/resources/DocumentReference-DocumentReferenceExample1.jsonThe Coding provided (https://fhir.cqdg.ca/CodeSystem/document-format#TGZ) was not found in the value set 'DocumentReference Format Code Set' (http://hl7.org/fhir/ValueSet/formatcodes|4.0.1), and a code is recommended to come from this value set. (error message = The provided code 'https://fhir.cqdg.ca/CodeSystem/document-format#TGZ: 'TGZ Archive File'' was not found in the value set 'http://hl7.org/fhir/ValueSet/formatcodes|4.0.1')
fsh-generated/resources/DocumentReference-DocumentReferenceExample2.jsonThe Coding provided (https://fhir.cqdg.ca/CodeSystem/document-format#TGZ) was not found in the value set 'DocumentReference Format Code Set' (http://hl7.org/fhir/ValueSet/formatcodes|4.0.1), and a code is recommended to come from this value set. (error message = The provided code 'https://fhir.cqdg.ca/CodeSystem/document-format#TGZ: 'TGZ Archive File'' was not found in the value set 'http://hl7.org/fhir/ValueSet/formatcodes|4.0.1')

Terminology_TX_NoValid_16

fsh-generated/resources/Specimen-SpecimenExample.jsonThe value provided ('http://purl.obolibrary.org/obo/ncit.owl') was not found in the value set 'Ferlab.bio ValueSet/sample-type-tissue-source' (https://fhir.cqdg.ca/ValueSet/sample-type-tissue-source-vs|0.1.0), and a code is required from this value set (error message = The System URI could not be determined for the code 'http://purl.obolibrary.org/obo/ncit.owl' in the ValueSet 'https://fhir.cqdg.ca/ValueSet/sample-type-tissue-source-vs|0.1.0'; The provided code '#http://purl.obolibrary.org/obo/ncit.owl' was not found in the value set 'https://fhir.cqdg.ca/ValueSet/sample-type-tissue-source-vs|0.1.0')

Terminology_TX_NoValid_3_CC

fsh-generated/resources/DocumentReference-DocumentReferenceExample1.jsonNone of the codings provided are in the value set 'Document Type Value Set' (http://hl7.org/fhir/ValueSet/c80-doc-typecodes|4.0.1), and a coding is recommended to come from this value set (codes = https://fhir.cqdg.ca/CodeSystem/data-type#Sequencing-data-supplement)
fsh-generated/resources/DocumentReference-DocumentReferenceExample2.jsonNone of the codings provided are in the value set 'Document Type Value Set' (http://hl7.org/fhir/ValueSet/c80-doc-typecodes|4.0.1), and a coding is recommended to come from this value set (codes = https://fhir.cqdg.ca/CodeSystem/data-type#Aligned-reads)

VALIDATION_VAL_PROFILE_UNKNOWN_NOT_POLICY

fsh-generated/resources/Task-CQDGTaskExample.jsonProfile reference 'https://fhir.cqdg.ca/StructureDefinition/cqgc-analysis-task' has not been checked because it could not be found, and the validator is set to not fetch unknown profiles