Ferlab.bio Example/cqdg-study - TTL Representation

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: Ferlab.bio Example/cqdg-study - TTL Representation

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:ResearchStudy ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "ResearchStudyExample"] ; # 
  fhir:meta [
    ( fhir:profile [
fhir:v "https://fhir.cqdg.ca/StructureDefinition/cqdg-research-study"^^xsd:anyURI ;
fhir:link <https://fhir.cqdg.ca/StructureDefinition/cqdg-research-study>     ] [
fhir:v "https://fhir.cqdg.ca/StructureDefinition/CQDGResearchStudy"^^xsd:anyURI ;
fhir:link <https://fhir.cqdg.ca/StructureDefinition/CQDGResearchStudy>     ] )
  ] ; # 
  fhir:text [
fhir:status [ fhir:v "extensions" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ResearchStudy ResearchStudyExample</b></p><a name=\"ResearchStudyExample\"> </a><a name=\"hcResearchStudyExample\"> </a><a name=\"ResearchStudyExample-en-US\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profiles: <a href=\"StructureDefinition-cqdg-research-study.html\">Ferlab.bio StructureDefinition/cqdg-study</a>, <a href=\"https://simplifier.net/resolve?scope=hl7.fhir.ca.baseline@1.0.2&amp;canonical=https://fhir.cqdg.ca/StructureDefinition/CQDGResearchStudy\">https://fhir.cqdg.ca/StructureDefinition/CQDGResearchStudy</a></p></div><p><b>Ferlab.bio Extension/data-category</b>: <span title=\"Codes:{https://fhir.cqdg.ca/CodeSystem/data-category genomics}\">Genomics</span></p><p><b>Ferlab.bio Extension/data-category</b>: <span title=\"Codes:{https://fhir.cqdg.ca/CodeSystem/data-category other}\">Other</span></p><p><b>Ferlab.bio Extension/data-category</b>: <span title=\"Codes:{https://fhir.cqdg.ca/CodeSystem/study-design registry}\">Registry</span></p><p><b>Ferlab.bio Extension/data-category</b>: <span title=\"Codes:{https://fhir.cqdg.ca/CodeSystem/study-design cohort}\">Cohort</span></p><p><b>Ferlab.bio Extension/data-collection-method</b>: <span title=\"Codes:{https://fhir.cqdg.ca/CodeSystem/data-collection-method medical_records}\">Medical Records</span></p><p><b>Ferlab.bio Extension/data-collection-method</b>: <span title=\"Codes:{https://fhir.cqdg.ca/CodeSystem/data-collection-method investigator_assessment}\">Investigator Assessment</span></p><p><b>Restricted</b>: false</p><p><b>Ferlab.bio Extension/access-limitations</b>: [not stated] DUO:0000005: obsolete general research use and clinical care</p><p><b>Ferlab.bio Extension/access-requirement</b>: [not stated] DUO:0000019: publication required</p><p><b>Ferlab.bio Extension/access-requirement</b>: [not stated] $DUO:0000021: ethics approval required</p><p><b>Ferlab.bio Extension/access-requirement</b>: [not stated] $DUO:0000025: time limit on use</p><p><b>Ferlab.bio Extension/access-requirement</b>: [not stated] DUO:0000026: user specific restriction</p><p><b>Ferlab.bio Extension/access-requirement</b>: [not stated] DUO:0000027: project specific restriction</p><p><b>Ferlab.bio Extension/access-requirement</b>: [not stated] DUO:0000029: return to database or resource</p><blockquote><p><b>Ferlab.bio Extension/dataset</b></p><ul><li>name: Dataset 1</li><li>description: Dataset 1 description</li></ul></blockquote><blockquote><p><b>Ferlab.bio Extension/dataset</b></p><ul><li>name: Dataset 2</li><li>description: Dataset 2 description</li></ul></blockquote><blockquote><p><b>Ferlab.bio Extension/expectedStudyContent</b></p><ul><li>expectedNumberParticipants: 22</li><li>expectedNumberBiospecimens: 22</li><li>expectedNumberFiles: 22</li><li>restrictedNumberParticipants: 3</li><li>restrictedNumberBiospeciment: 4</li><li>restrictedNumberFiles: 5</li></ul></blockquote><p><b>identifier</b>: <code>https://fhir.cqdg.ca/fhir/ResearchStudy</code>/ResearchStudyExample, CAG (use: secondary, )</p><p><b>title</b>: CARTaGENE</p><p><b>status</b>: Completed</p><p><b>category</b>: <span title=\"Codes:{https://fhir.cqdg.ca/CodeSystem/study-domain General Health}\">General Health</span></p><p><b>contact</b>: TBD: <a href=\"https://sdas.cartagene.qc.ca\">https://sdas.cartagene.qc.ca</a></p><p><b>keyword</b>: <span title=\"Codes:\">genomics</span>, <span title=\"Codes:\">chronic conditions</span>, <span title=\"Codes:\">population-based cohort</span>, <span title=\"Codes:\">survey data</span></p><p><b>description</b>: </p><div><p>CARTaGENE is a public research platform of the CHU Sainte-Justine created to accelerate health research. CARTaGENE consists of both biological samples and health data from 43,000 Qu√©bec residents aged between 40 to 69 years.</p>\n</div></div>"^^rdf:XMLLiteral
  ] ; # 
  fhir:extension ( [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/DataCategoryExtension"^^xsd:anyURI ] ;
fhir:value [
a fhir:CodeableConcept ;
      ( fhir:coding [
fhir:system [ fhir:v "https://fhir.cqdg.ca/CodeSystem/data-category"^^xsd:anyURI ] ;
fhir:code [ fhir:v "genomics" ]       ] )     ]
  ] [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/StudyDesignExtension"^^xsd:anyURI ] ;
fhir:value [
a fhir:CodeableConcept ;
      ( fhir:coding [
fhir:system [ fhir:v "https://fhir.cqdg.ca/CodeSystem/study-design"^^xsd:anyURI ] ;
fhir:code [ fhir:v "registry" ]       ] )     ]
  ] [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/DataCollectionMethodExtension"^^xsd:anyURI ] ;
fhir:value [
a fhir:CodeableConcept ;
      ( fhir:coding [
fhir:system [ fhir:v "https://fhir.cqdg.ca/CodeSystem/data-collection-method"^^xsd:anyURI ] ;
fhir:code [ fhir:v "medical_records" ]       ] )     ]
  ] [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/Restricted"^^xsd:anyURI ] ;
fhir:value [
a fhir:boolean ;
fhir:v false     ]
  ] [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/AccessLimitations"^^xsd:anyURI ] ;
fhir:value [
a fhir:Coding ;
fhir:code [ fhir:v "DUO:0000005" ] ;
fhir:display [ fhir:v "obsolete general research use and clinical care" ]     ]
  ] [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/AccessRequirements"^^xsd:anyURI ] ;
fhir:value [
a fhir:Coding ;
fhir:code [ fhir:v "DUO:0000019" ] ;
fhir:display [ fhir:v "publication required" ]     ]
  ] [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/AccessRequirements"^^xsd:anyURI ] ;
fhir:value [
a fhir:Coding ;
fhir:code [ fhir:v "$DUO:0000021" ] ;
fhir:display [ fhir:v "ethics approval required" ]     ]
  ] [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/AccessRequirements"^^xsd:anyURI ] ;
fhir:value [
a fhir:Coding ;
fhir:code [ fhir:v "$DUO:0000025" ] ;
fhir:display [ fhir:v "time limit on use" ]     ]
  ] [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/AccessRequirements"^^xsd:anyURI ] ;
fhir:value [
a fhir:Coding ;
fhir:code [ fhir:v "DUO:0000026" ] ;
fhir:display [ fhir:v "user specific restriction" ]     ]
  ] [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/AccessRequirements"^^xsd:anyURI ] ;
fhir:value [
a fhir:Coding ;
fhir:code [ fhir:v "DUO:0000027" ] ;
fhir:display [ fhir:v "project specific restriction" ]     ]
  ] [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/AccessRequirements"^^xsd:anyURI ] ;
fhir:value [
a fhir:Coding ;
fhir:code [ fhir:v "DUO:0000029" ] ;
fhir:display [ fhir:v "return to database or resource" ]     ]
  ] [
    ( fhir:extension [
fhir:url [ fhir:v "name"^^xsd:anyURI ] ;
fhir:value [
a fhir:string ;
fhir:v "Dataset 1"       ]     ] [
fhir:url [ fhir:v "description"^^xsd:anyURI ] ;
fhir:value [
a fhir:string ;
fhir:v "Dataset 1 description"       ]     ] ) ;
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/dataset"^^xsd:anyURI ]
  ] [
    ( fhir:extension [
fhir:url [ fhir:v "name"^^xsd:anyURI ] ;
fhir:value [
a fhir:string ;
fhir:v "Dataset 2"       ]     ] [
fhir:url [ fhir:v "description"^^xsd:anyURI ] ;
fhir:value [
a fhir:string ;
fhir:v "Dataset 2 description"       ]     ] ) ;
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/dataset"^^xsd:anyURI ]
  ] [
    ( fhir:extension [
fhir:url [ fhir:v "expectedNumberParticipants"^^xsd:anyURI ] ;
fhir:value [
a fhir:integer ;
fhir:v 22       ]     ] [
fhir:url [ fhir:v "expectedNumberBiospecimens"^^xsd:anyURI ] ;
fhir:value [
a fhir:integer ;
fhir:v 22       ]     ] [
fhir:url [ fhir:v "expectedNumberFiles"^^xsd:anyURI ] ;
fhir:value [
a fhir:integer ;
fhir:v 22       ]     ] [
fhir:url [ fhir:v "restrictedNumberParticipants"^^xsd:anyURI ] ;
fhir:value [
a fhir:integer ;
fhir:v 3       ]     ] [
fhir:url [ fhir:v "restrictedNumberBiospeciment"^^xsd:anyURI ] ;
fhir:value [
a fhir:integer ;
fhir:v 4       ]     ] [
fhir:url [ fhir:v "restrictedNumberFiles"^^xsd:anyURI ] ;
fhir:value [
a fhir:integer ;
fhir:v 5       ]     ] ) ;
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/ResearchStudy/ExpectedContent"^^xsd:anyURI ]
  ] [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/DataCategoryExtension"^^xsd:anyURI ] ;
fhir:value [
a fhir:CodeableConcept ;
      ( fhir:coding [
fhir:system [ fhir:v "https://fhir.cqdg.ca/CodeSystem/data-category"^^xsd:anyURI ] ;
fhir:code [ fhir:v "other" ]       ] )     ]
  ] [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/StudyDesignExtension"^^xsd:anyURI ] ;
fhir:value [
a fhir:CodeableConcept ;
      ( fhir:coding [
fhir:system [ fhir:v "https://fhir.cqdg.ca/CodeSystem/study-design"^^xsd:anyURI ] ;
fhir:code [ fhir:v "cohort" ]       ] )     ]
  ] [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/DataCollectionMethodExtension"^^xsd:anyURI ] ;
fhir:value [
a fhir:CodeableConcept ;
      ( fhir:coding [
fhir:system [ fhir:v "https://fhir.cqdg.ca/CodeSystem/data-collection-method"^^xsd:anyURI ] ;
fhir:code [ fhir:v "investigator_assessment" ]       ] )     ]
  ] ) ; # 
  fhir:identifier ( [
fhir:system [ fhir:v "https://fhir.cqdg.ca/fhir/ResearchStudy"^^xsd:anyURI ] ;
fhir:value [ fhir:v "ResearchStudyExample" ]
  ] [
fhir:use [ fhir:v "secondary" ] ;
fhir:value [ fhir:v "CAG" ]
  ] ) ; # 
  fhir:title [ fhir:v "CARTaGENE"] ; # 
  fhir:status [ fhir:v "completed"] ; # 
  fhir:category ( [
    ( fhir:coding [
fhir:system [ fhir:v "https://fhir.cqdg.ca/CodeSystem/study-domain"^^xsd:anyURI ] ;
fhir:code [ fhir:v "General Health" ] ;
fhir:display [ fhir:v "General Health" ]     ] )
  ] ) ; # 
  fhir:contact ( [
fhir:name [ fhir:v "TBD" ] ;
    ( fhir:telecom [
fhir:system [ fhir:v "url" ] ;
fhir:value [ fhir:v "https://sdas.cartagene.qc.ca" ]     ] )
  ] ) ; # 
  fhir:keyword ( [
fhir:text [ fhir:v "genomics" ]
  ] [
fhir:text [ fhir:v "chronic conditions" ]
  ] [
fhir:text [ fhir:v "population-based cohort" ]
  ] [
fhir:text [ fhir:v "survey data" ]
  ] ) ; # 
  fhir:description [ fhir:v "CARTaGENE is a public research platform of the CHU Sainte-Justine created to accelerate health research. CARTaGENE consists of both biological samples and health data from 43,000 Qu√©bec residents aged between 40 to 69 years."] . #