0.1.0 - ci-build

CQDG_FHIR_IG - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

: Ferlab.bio Example/cqdg-study - TTL Representation

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/ResearchStudy/ResearchStudyExample> a fhir:ResearchStudy ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:Resource.id [ fhir:value "ResearchStudyExample"] ;
  fhir:Resource.meta [
     fhir:Meta.profile [
       fhir:value "https://fhir.cqdg.ca/StructureDefinition/cqdg-research-study" ;
       fhir:index 0 ;
       fhir:link <https://fhir.cqdg.ca/StructureDefinition/cqdg-research-study>
     ], [
       fhir:value "https://fhir.cqdg.ca/StructureDefinition/CQDGResearchStudy" ;
       fhir:index 1 ;
       fhir:link <https://fhir.cqdg.ca/StructureDefinition/CQDGResearchStudy>
     ]
  ] ;
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "extensions" ] ;
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ResearchStudy ResearchStudyExample</b></p><a name=\"ResearchStudyExample\"> </a><a name=\"hcResearchStudyExample\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profiles: <a href=\"StructureDefinition-cqdg-research-study.html\">Ferlab.bio StructureDefinition/cqdg-study</a>, <a href=\"https://simplifier.net/resolve?scope=hl7.fhir.ca.baseline@1.0.2&amp;canonical=https://fhir.cqdg.ca/StructureDefinition/CQDGResearchStudy\">https://fhir.cqdg.ca/StructureDefinition/CQDGResearchStudy</a></p></div><p><b>Ferlab.bio Extension/data-category</b>: <span title=\"Codes:{https://fhir.cqdg.ca/CodeSystem/data-category genomics}\">Genomics</span></p><p><b>Ferlab.bio Extension/data-category</b>: <span title=\"Codes:{https://fhir.cqdg.ca/CodeSystem/data-category other}\">Other</span></p><p><b>Ferlab.bio Extension/data-category</b>: <span title=\"Codes:{https://fhir.cqdg.ca/CodeSystem/study-design registry}\">Registry</span></p><p><b>Ferlab.bio Extension/data-category</b>: <span title=\"Codes:{https://fhir.cqdg.ca/CodeSystem/study-design cohort}\">Cohort</span></p><p><b>Ferlab.bio Extension/data-collection-method</b>: <span title=\"Codes:{https://fhir.cqdg.ca/CodeSystem/data-collection-method medical_records}\">Medical Records</span></p><p><b>Ferlab.bio Extension/data-collection-method</b>: <span title=\"Codes:{https://fhir.cqdg.ca/CodeSystem/data-collection-method investigator_assessment}\">Investigator Assessment</span></p><p><b>Restricted</b>: false</p><p><b>Ferlab.bio Extension/access-limitations</b>: [not stated]: DUO:0000005 (obsolete general research use and clinical care)</p><p><b>Ferlab.bio Extension/access-requirement</b>: [not stated]: DUO:0000019 (publication required)</p><p><b>Ferlab.bio Extension/access-requirement</b>: [not stated]: $DUO:0000021 (ethics approval required)</p><p><b>Ferlab.bio Extension/access-requirement</b>: [not stated]: $DUO:0000025 (time limit on use)</p><p><b>Ferlab.bio Extension/access-requirement</b>: [not stated]: DUO:0000026 (user specific restriction)</p><p><b>Ferlab.bio Extension/access-requirement</b>: [not stated]: DUO:0000027 (project specific restriction)</p><p><b>Ferlab.bio Extension/access-requirement</b>: [not stated]: DUO:0000029 (return to database or resource)</p><blockquote><p><b>Ferlab.bio Extension/dataset</b></p><ul><li>name: Dataset 1</li><li>description: Dataset 1 description</li></ul></blockquote><blockquote><p><b>Ferlab.bio Extension/dataset</b></p><ul><li>name: Dataset 2</li><li>description: Dataset 2 description</li></ul></blockquote><blockquote><p><b>Ferlab.bio Extension/expectedStudyContent</b></p><ul><li>expectedNumberParticipants: 22</li><li>expectedNumberBiospecimens: 22</li><li>expectedNumberFiles: 22</li><li>restrictedNumberParticipants: 3</li><li>restrictedNumberBiospeciment: 4</li><li>restrictedNumberFiles: 5</li></ul></blockquote><p><b>identifier</b>: <code>https://fhir.cqdg.ca/fhir/ResearchStudy</code>/ResearchStudyExample, CAG (use: secondary, )</p><p><b>title</b>: CARTaGENE</p><p><b>status</b>: Completed</p><p><b>category</b>: <span title=\"Codes:{https://fhir.cqdg.ca/CodeSystem/study-domain General Health}\">General Health</span></p><p><b>contact</b>: TBD: <a href=\"https://sdas.cartagene.qc.ca\">https://sdas.cartagene.qc.ca</a></p><p><b>keyword</b>: <span title=\"Codes:\">genomics</span>, <span title=\"Codes:\">chronic conditions</span>, <span title=\"Codes:\">population-based cohort</span>, <span title=\"Codes:\">survey data</span></p><p><b>description</b>: </p><div><p>CARTaGENE is a public research platform of the CHU Sainte-Justine created to accelerate health research. CARTaGENE consists of both biological samples and health data from 43,000 Qu√©bec residents aged between 40 to 69 years.</p>\n</div></div>"
  ] ;
  fhir:DomainResource.extension [
     fhir:index 0 ;
     fhir:Extension.url [ fhir:value "https://fhir.cqdg.ca/StructureDefinition/DataCategoryExtension" ] ;
     fhir:Extension.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://fhir.cqdg.ca/CodeSystem/data-category" ] ;
         fhir:Coding.code [ fhir:value "genomics" ]
       ]
     ]
  ], [
     fhir:index 1 ;
     fhir:Extension.url [ fhir:value "https://fhir.cqdg.ca/StructureDefinition/StudyDesignExtension" ] ;
     fhir:Extension.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://fhir.cqdg.ca/CodeSystem/study-design" ] ;
         fhir:Coding.code [ fhir:value "registry" ]
       ]
     ]
  ], [
     fhir:index 2 ;
     fhir:Extension.url [ fhir:value "https://fhir.cqdg.ca/StructureDefinition/DataCollectionMethodExtension" ] ;
     fhir:Extension.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://fhir.cqdg.ca/CodeSystem/data-collection-method" ] ;
         fhir:Coding.code [ fhir:value "medical_records" ]
       ]
     ]
  ], [
     fhir:index 3 ;
     fhir:Extension.url [ fhir:value "https://fhir.cqdg.ca/StructureDefinition/Restricted" ] ;
     fhir:Extension.valueBoolean [ fhir:value "false"^^xsd:boolean ]
  ], [
     fhir:index 4 ;
     fhir:Extension.url [ fhir:value "https://fhir.cqdg.ca/StructureDefinition/AccessLimitations" ] ;
     fhir:Extension.valueCoding [
       fhir:Coding.code [ fhir:value "DUO:0000005" ] ;
       fhir:Coding.display [ fhir:value "obsolete general research use and clinical care" ]
     ]
  ], [
     fhir:index 5 ;
     fhir:Extension.url [ fhir:value "https://fhir.cqdg.ca/StructureDefinition/AccessRequirements" ] ;
     fhir:Extension.valueCoding [
       fhir:Coding.code [ fhir:value "DUO:0000019" ] ;
       fhir:Coding.display [ fhir:value "publication required" ]
     ]
  ], [
     fhir:index 6 ;
     fhir:Extension.url [ fhir:value "https://fhir.cqdg.ca/StructureDefinition/AccessRequirements" ] ;
     fhir:Extension.valueCoding [
       fhir:Coding.code [ fhir:value "$DUO:0000021" ] ;
       fhir:Coding.display [ fhir:value "ethics approval required" ]
     ]
  ], [
     fhir:index 7 ;
     fhir:Extension.url [ fhir:value "https://fhir.cqdg.ca/StructureDefinition/AccessRequirements" ] ;
     fhir:Extension.valueCoding [
       fhir:Coding.code [ fhir:value "$DUO:0000025" ] ;
       fhir:Coding.display [ fhir:value "time limit on use" ]
     ]
  ], [
     fhir:index 8 ;
     fhir:Extension.url [ fhir:value "https://fhir.cqdg.ca/StructureDefinition/AccessRequirements" ] ;
     fhir:Extension.valueCoding [
       fhir:Coding.code [ fhir:value "DUO:0000026" ] ;
       fhir:Coding.display [ fhir:value "user specific restriction" ]
     ]
  ], [
     fhir:index 9 ;
     fhir:Extension.url [ fhir:value "https://fhir.cqdg.ca/StructureDefinition/AccessRequirements" ] ;
     fhir:Extension.valueCoding [
       fhir:Coding.code [ fhir:value "DUO:0000027" ] ;
       fhir:Coding.display [ fhir:value "project specific restriction" ]
     ]
  ], [
     fhir:index 10 ;
     fhir:Extension.url [ fhir:value "https://fhir.cqdg.ca/StructureDefinition/AccessRequirements" ] ;
     fhir:Extension.valueCoding [
       fhir:Coding.code [ fhir:value "DUO:0000029" ] ;
       fhir:Coding.display [ fhir:value "return to database or resource" ]
     ]
  ], [
     fhir:index 11 ;
     fhir:Element.extension [
       fhir:index 0 ;
       fhir:Extension.url [ fhir:value "name" ] ;
       fhir:Extension.valueString [ fhir:value "Dataset 1" ]
     ], [
       fhir:index 1 ;
       fhir:Extension.url [ fhir:value "description" ] ;
       fhir:Extension.valueString [ fhir:value "Dataset 1 description" ]
     ] ;
     fhir:Extension.url [ fhir:value "https://fhir.cqdg.ca/StructureDefinition/dataset" ]
  ], [
     fhir:index 12 ;
     fhir:Element.extension [
       fhir:index 0 ;
       fhir:Extension.url [ fhir:value "name" ] ;
       fhir:Extension.valueString [ fhir:value "Dataset 2" ]
     ], [
       fhir:index 1 ;
       fhir:Extension.url [ fhir:value "description" ] ;
       fhir:Extension.valueString [ fhir:value "Dataset 2 description" ]
     ] ;
     fhir:Extension.url [ fhir:value "https://fhir.cqdg.ca/StructureDefinition/dataset" ]
  ], [
     fhir:index 13 ;
     fhir:Element.extension [
       fhir:index 0 ;
       fhir:Extension.url [ fhir:value "expectedNumberParticipants" ] ;
       fhir:Extension.valueInteger [ fhir:value "22"^^xsd:integer ]
     ], [
       fhir:index 1 ;
       fhir:Extension.url [ fhir:value "expectedNumberBiospecimens" ] ;
       fhir:Extension.valueInteger [ fhir:value "22"^^xsd:integer ]
     ], [
       fhir:index 2 ;
       fhir:Extension.url [ fhir:value "expectedNumberFiles" ] ;
       fhir:Extension.valueInteger [ fhir:value "22"^^xsd:integer ]
     ], [
       fhir:index 3 ;
       fhir:Extension.url [ fhir:value "restrictedNumberParticipants" ] ;
       fhir:Extension.valueInteger [ fhir:value "3"^^xsd:integer ]
     ], [
       fhir:index 4 ;
       fhir:Extension.url [ fhir:value "restrictedNumberBiospeciment" ] ;
       fhir:Extension.valueInteger [ fhir:value "4"^^xsd:integer ]
     ], [
       fhir:index 5 ;
       fhir:Extension.url [ fhir:value "restrictedNumberFiles" ] ;
       fhir:Extension.valueInteger [ fhir:value "5"^^xsd:integer ]
     ] ;
     fhir:Extension.url [ fhir:value "https://fhir.cqdg.ca/StructureDefinition/ResearchStudy/ExpectedContent" ]
  ], [
     fhir:index 14 ;
     fhir:Extension.url [ fhir:value "https://fhir.cqdg.ca/StructureDefinition/DataCategoryExtension" ] ;
     fhir:Extension.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://fhir.cqdg.ca/CodeSystem/data-category" ] ;
         fhir:Coding.code [ fhir:value "other" ]
       ]
     ]
  ], [
     fhir:index 15 ;
     fhir:Extension.url [ fhir:value "https://fhir.cqdg.ca/StructureDefinition/StudyDesignExtension" ] ;
     fhir:Extension.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://fhir.cqdg.ca/CodeSystem/study-design" ] ;
         fhir:Coding.code [ fhir:value "cohort" ]
       ]
     ]
  ], [
     fhir:index 16 ;
     fhir:Extension.url [ fhir:value "https://fhir.cqdg.ca/StructureDefinition/DataCollectionMethodExtension" ] ;
     fhir:Extension.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "https://fhir.cqdg.ca/CodeSystem/data-collection-method" ] ;
         fhir:Coding.code [ fhir:value "investigator_assessment" ]
       ]
     ]
  ] ;
  fhir:ResearchStudy.identifier [
     fhir:index 0 ;
     fhir:Identifier.system [ fhir:value "https://fhir.cqdg.ca/fhir/ResearchStudy" ] ;
     fhir:Identifier.value [ fhir:value "ResearchStudyExample" ]
  ], [
     fhir:index 1 ;
     fhir:Identifier.use [ fhir:value "secondary" ] ;
     fhir:Identifier.value [ fhir:value "CAG" ]
  ] ;
  fhir:ResearchStudy.title [ fhir:value "CARTaGENE"] ;
  fhir:ResearchStudy.status [ fhir:value "completed"] ;
  fhir:ResearchStudy.category [
     fhir:index 0 ;
     fhir:CodeableConcept.coding [
       fhir:index 0 ;
       fhir:Coding.system [ fhir:value "https://fhir.cqdg.ca/CodeSystem/study-domain" ] ;
       fhir:Coding.code [ fhir:value "General Health" ] ;
       fhir:Coding.display [ fhir:value "General Health" ]
     ]
  ] ;
  fhir:ResearchStudy.contact [
     fhir:index 0 ;
     fhir:ContactDetail.name [ fhir:value "TBD" ] ;
     fhir:ContactDetail.telecom [
       fhir:index 0 ;
       fhir:ContactPoint.system [ fhir:value "url" ] ;
       fhir:ContactPoint.value [ fhir:value "https://sdas.cartagene.qc.ca" ]
     ]
  ] ;
  fhir:ResearchStudy.keyword [
     fhir:index 0 ;
     fhir:CodeableConcept.text [ fhir:value "genomics" ]
  ], [
     fhir:index 1 ;
     fhir:CodeableConcept.text [ fhir:value "chronic conditions" ]
  ], [
     fhir:index 2 ;
     fhir:CodeableConcept.text [ fhir:value "population-based cohort" ]
  ], [
     fhir:index 3 ;
     fhir:CodeableConcept.text [ fhir:value "survey data" ]
  ] ;
  fhir:ResearchStudy.description [ fhir:value "CARTaGENE is a public research platform of the CHU Sainte-Justine created to accelerate health research. CARTaGENE consists of both biological samples and health data from 43,000 Québec residents aged between 40 to 69 years."] .

# - ontology header ------------------------------------------------------------

<http://hl7.org/fhir/ResearchStudy/ResearchStudyExample.ttl> a owl:Ontology ;
  owl:imports fhir:fhir.ttl ;
  owl:versionIRI <http://build.fhir.org/ResearchStudy/ResearchStudyExample.ttl> .