Ferlab.bio Example/cqdg-study - TTL Representation

CQDG_FHIR_IG - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions
: Ferlab.bio Example/cqdg-study - TTL Representation

Raw ttl | Download

@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:ResearchStudy ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "ResearchStudyExample"] ; # 
  fhir:meta [
    ( fhir:profile [
fhir:v "https://fhir.cqdg.ca/StructureDefinition/cqdg-research-study"^^xsd:anyURI ;
fhir:link <https://fhir.cqdg.ca/StructureDefinition/cqdg-research-study>     ] [
fhir:v "http://hl7.org/fhir/StructureDefinition/ResearchStudy"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/StructureDefinition/ResearchStudy>     ] )
  ] ; # 
  fhir:text [
fhir:status [ fhir:v "extensions" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ResearchStudy ResearchStudyExample</b></p><a name=\"ResearchStudyExample\"> </a><a name=\"hcResearchStudyExample\"> </a><a name=\"ResearchStudyExample-en-US\"> </a><p><b>Ferlab.bio Extension/data-category</b>: <span title=\"Codes:{https://fhir.cqdg.ca/CodeSystem/data-category genomics}\">Genomics</span></p><p><b>Ferlab.bio Extension/data-category</b>: <span title=\"Codes:{https://fhir.cqdg.ca/CodeSystem/data-category other}\">Other</span></p><p><b>Ferlab.bio Extension/data-category</b>: <span title=\"Codes:{https://fhir.cqdg.ca/CodeSystem/study-design registry}\">Registry</span></p><p><b>Ferlab.bio Extension/data-category</b>: <span title=\"Codes:{https://fhir.cqdg.ca/CodeSystem/study-design cohort}\">Cohort</span></p><p><b>Ferlab.bio Extension/data-collection-method</b>: <span title=\"Codes:{https://fhir.cqdg.ca/CodeSystem/data-collection-method medical_records}\">Medical Records</span></p><p><b>Ferlab.bio Extension/data-collection-method</b>: <span title=\"Codes:{https://fhir.cqdg.ca/CodeSystem/data-collection-method investigator_assessment}\">Investigator Assessment</span></p><p><b>Restricted</b>: false</p><p><b>Ferlab.bio Extension/access-limitations</b>: [not stated] DUO:0000005: obsolete general research use and clinical care</p><p><b>Ferlab.bio Extension/access-requirement</b>: [not stated] DUO:0000019: publication required</p><p><b>Ferlab.bio Extension/access-requirement</b>: [not stated] $DUO:0000021: ethics approval required</p><p><b>Ferlab.bio Extension/access-requirement</b>: [not stated] $DUO:0000025: time limit on use</p><p><b>Ferlab.bio Extension/access-requirement</b>: [not stated] DUO:0000026: user specific restriction</p><p><b>Ferlab.bio Extension/access-requirement</b>: [not stated] DUO:0000027: project specific restriction</p><p><b>Ferlab.bio Extension/access-requirement</b>: [not stated] DUO:0000029: return to database or resource</p><blockquote><p><b>Ferlab.bio Extension/dataset</b></p><ul><li>name: Dataset 1</li><li>description: Dataset 1 description</li></ul></blockquote><blockquote><p><b>Ferlab.bio Extension/dataset</b></p><ul><li>name: Dataset 2</li><li>description: Dataset 2 description</li></ul></blockquote><blockquote><p><b>Ferlab.bio Extension/expectedStudyContent</b></p><ul><li>expectedNumberParticipants: 22</li><li>expectedNumberBiospecimens: 22</li><li>expectedNumberFiles: 22</li><li>restrictedNumberParticipants: 3</li><li>restrictedNumberBiospeciment: 4</li><li>restrictedNumberFiles: 5</li></ul></blockquote><p><b>identifier</b>: <code>https://fhir.cqdg.ca/fhir/ResearchStudy</code>/ResearchStudyExample, CAG (use: secondary, )</p><p><b>title</b>: CARTaGENE</p><p><b>status</b>: Completed</p><p><b>category</b>: <span title=\"Codes:{https://fhir.cqdg.ca/CodeSystem/study-domain General Health}\">General Health</span></p><p><b>contact</b>: TBD: <a href=\"https://sdas.cartagene.qc.ca\">https://sdas.cartagene.qc.ca</a></p><p><b>keyword</b>: <span title=\"Codes:\">genomics</span>, <span title=\"Codes:\">chronic conditions</span>, <span title=\"Codes:\">population-based cohort</span>, <span title=\"Codes:\">survey data</span></p><p><b>description</b>: </p><div><p>CARTaGENE is a public research platform of the CHU Sainte-Justine created to accelerate health research. CARTaGENE consists of both biological samples and health data from 43,000 Qu√©bec residents aged between 40 to 69 years.</p>\n</div></div>"
  ] ; # 
  fhir:extension ( [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/DataCategoryExtension"^^xsd:anyURI ] ;
fhir:value [
a fhir:CodeableConcept ;
      ( fhir:coding [
fhir:system [ fhir:v "https://fhir.cqdg.ca/CodeSystem/data-category"^^xsd:anyURI ] ;
fhir:code [ fhir:v "genomics" ]       ] )     ]
  ] [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/StudyDesignExtension"^^xsd:anyURI ] ;
fhir:value [
a fhir:CodeableConcept ;
      ( fhir:coding [
fhir:system [ fhir:v "https://fhir.cqdg.ca/CodeSystem/study-design"^^xsd:anyURI ] ;
fhir:code [ fhir:v "registry" ]       ] )     ]
  ] [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/DataCollectionMethodExtension"^^xsd:anyURI ] ;
fhir:value [
a fhir:CodeableConcept ;
      ( fhir:coding [
fhir:system [ fhir:v "https://fhir.cqdg.ca/CodeSystem/data-collection-method"^^xsd:anyURI ] ;
fhir:code [ fhir:v "medical_records" ]       ] )     ]
  ] [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/Restricted"^^xsd:anyURI ] ;
fhir:value [ fhir:v "false"^^xsd:boolean ]
  ] [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/AccessLimitations"^^xsd:anyURI ] ;
fhir:value [
a fhir:Coding ;
fhir:code [ fhir:v "DUO:0000005" ] ;
fhir:display [ fhir:v "obsolete general research use and clinical care" ]     ]
  ] [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/AccessRequirements"^^xsd:anyURI ] ;
fhir:value [
a fhir:Coding ;
fhir:code [ fhir:v "DUO:0000019" ] ;
fhir:display [ fhir:v "publication required" ]     ]
  ] [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/AccessRequirements"^^xsd:anyURI ] ;
fhir:value [
a fhir:Coding ;
fhir:code [ fhir:v "$DUO:0000021" ] ;
fhir:display [ fhir:v "ethics approval required" ]     ]
  ] [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/AccessRequirements"^^xsd:anyURI ] ;
fhir:value [
a fhir:Coding ;
fhir:code [ fhir:v "$DUO:0000025" ] ;
fhir:display [ fhir:v "time limit on use" ]     ]
  ] [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/AccessRequirements"^^xsd:anyURI ] ;
fhir:value [
a fhir:Coding ;
fhir:code [ fhir:v "DUO:0000026" ] ;
fhir:display [ fhir:v "user specific restriction" ]     ]
  ] [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/AccessRequirements"^^xsd:anyURI ] ;
fhir:value [
a fhir:Coding ;
fhir:code [ fhir:v "DUO:0000027" ] ;
fhir:display [ fhir:v "project specific restriction" ]     ]
  ] [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/AccessRequirements"^^xsd:anyURI ] ;
fhir:value [
a fhir:Coding ;
fhir:code [ fhir:v "DUO:0000029" ] ;
fhir:display [ fhir:v "return to database or resource" ]     ]
  ] [
    ( fhir:extension [
fhir:url [ fhir:v "name"^^xsd:anyURI ] ;
fhir:value [ fhir:v "Dataset 1" ]     ] [
fhir:url [ fhir:v "description"^^xsd:anyURI ] ;
fhir:value [ fhir:v "Dataset 1 description" ]     ] ) ;
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/dataset"^^xsd:anyURI ]
  ] [
    ( fhir:extension [
fhir:url [ fhir:v "name"^^xsd:anyURI ] ;
fhir:value [ fhir:v "Dataset 2" ]     ] [
fhir:url [ fhir:v "description"^^xsd:anyURI ] ;
fhir:value [ fhir:v "Dataset 2 description" ]     ] ) ;
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/dataset"^^xsd:anyURI ]
  ] [
    ( fhir:extension [
fhir:url [ fhir:v "expectedNumberParticipants"^^xsd:anyURI ] ;
fhir:value [ fhir:v "22"^^xsd:integer ]     ] [
fhir:url [ fhir:v "expectedNumberBiospecimens"^^xsd:anyURI ] ;
fhir:value [ fhir:v "22"^^xsd:integer ]     ] [
fhir:url [ fhir:v "expectedNumberFiles"^^xsd:anyURI ] ;
fhir:value [ fhir:v "22"^^xsd:integer ]     ] [
fhir:url [ fhir:v "restrictedNumberParticipants"^^xsd:anyURI ] ;
fhir:value [ fhir:v "3"^^xsd:integer ]     ] [
fhir:url [ fhir:v "restrictedNumberBiospeciment"^^xsd:anyURI ] ;
fhir:value [ fhir:v "4"^^xsd:integer ]     ] [
fhir:url [ fhir:v "restrictedNumberFiles"^^xsd:anyURI ] ;
fhir:value [ fhir:v "5"^^xsd:integer ]     ] ) ;
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/ResearchStudy/ExpectedContent"^^xsd:anyURI ]
  ] [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/DataCategoryExtension"^^xsd:anyURI ] ;
fhir:value [
a fhir:CodeableConcept ;
      ( fhir:coding [
fhir:system [ fhir:v "https://fhir.cqdg.ca/CodeSystem/data-category"^^xsd:anyURI ] ;
fhir:code [ fhir:v "other" ]       ] )     ]
  ] [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/StudyDesignExtension"^^xsd:anyURI ] ;
fhir:value [
a fhir:CodeableConcept ;
      ( fhir:coding [
fhir:system [ fhir:v "https://fhir.cqdg.ca/CodeSystem/study-design"^^xsd:anyURI ] ;
fhir:code [ fhir:v "cohort" ]       ] )     ]
  ] [
fhir:url [ fhir:v "https://fhir.cqdg.ca/StructureDefinition/DataCollectionMethodExtension"^^xsd:anyURI ] ;
fhir:value [
a fhir:CodeableConcept ;
      ( fhir:coding [
fhir:system [ fhir:v "https://fhir.cqdg.ca/CodeSystem/data-collection-method"^^xsd:anyURI ] ;
fhir:code [ fhir:v "investigator_assessment" ]       ] )     ]
  ] ) ; # 
  fhir:identifier ( [
fhir:system [ fhir:v "https://fhir.cqdg.ca/fhir/ResearchStudy"^^xsd:anyURI ] ;
fhir:value [ fhir:v "ResearchStudyExample" ]
  ] [
fhir:use [ fhir:v "secondary" ] ;
fhir:value [ fhir:v "CAG" ]
  ] ) ; # 
  fhir:title [ fhir:v "CARTaGENE"] ; # 
  fhir:status [ fhir:v "completed"] ; # 
  fhir:category ( [
    ( fhir:coding [
fhir:system [ fhir:v "https://fhir.cqdg.ca/CodeSystem/study-domain"^^xsd:anyURI ] ;
fhir:code [ fhir:v "General Health" ] ;
fhir:display [ fhir:v "General Health" ]     ] )
  ] ) ; # 
  fhir:contact ( [
fhir:name [ fhir:v "TBD" ] ;
    ( fhir:telecom [
fhir:system [ fhir:v "url" ] ;
fhir:value [ fhir:v "https://sdas.cartagene.qc.ca" ]     ] )
  ] ) ; # 
  fhir:keyword ( [
fhir:text [ fhir:v "genomics" ]
  ] [
fhir:text [ fhir:v "chronic conditions" ]
  ] [
fhir:text [ fhir:v "population-based cohort" ]
  ] [
fhir:text [ fhir:v "survey data" ]
  ] ) ; # 
  fhir:description [ fhir:v "CARTaGENE is a public research platform of the CHU Sainte-Justine created to accelerate health research. CARTaGENE consists of both biological samples and health data from 43,000 Qu√©bec residents aged between 40 to 69 years."] . #