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: Ferlab.bio CodeSystem/data-type - XML Representation

Active as of 2026-03-24

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<CodeSystem xmlns="http://hl7.org/fhir">
  <id value="data-type"/>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: CodeSystem data-type</b></p><a name="data-type"> </a><a name="hcdata-type"> </a><p>This case-sensitive code system <code>https://fhir.cqdg.ca/CodeSystem/data-type</code> defines the following codes:</p><table class="codes"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td></tr><tr><td style="white-space:nowrap">Raw-Sequencing-Reads<a name="data-type-Raw-Sequencing-Reads"> </a></td><td>Raw Sequencing Reads</td></tr><tr><td style="white-space:nowrap">Raw-Sequencing-Reads-R1<a name="data-type-Raw-Sequencing-Reads-R1"> </a></td><td>Raw Sequencing Reads R1</td></tr><tr><td style="white-space:nowrap">Raw-Sequencing-Reads-R2<a name="data-type-Raw-Sequencing-Reads-R2"> </a></td><td>Raw Sequencing Reads R2</td></tr><tr><td style="white-space:nowrap">Aligned-Reads<a name="data-type-Aligned-Reads"> </a></td><td>Aligned Reads</td></tr><tr><td style="white-space:nowrap">Aligned-Reads-Index<a name="data-type-Aligned-Reads-Index"> </a></td><td>Aligned Reads Index</td></tr><tr><td style="white-space:nowrap">SNV<a name="data-type-SNV"> </a></td><td>Single Nucleotide Variants (SNVs)</td></tr><tr><td style="white-space:nowrap">InDel<a name="data-type-InDel"> </a></td><td>Insertions and Deletions (InDels)</td></tr><tr><td style="white-space:nowrap">SV<a name="data-type-SV"> </a></td><td>Structural Variations (SVs)</td></tr><tr><td style="white-space:nowrap">CNV<a name="data-type-CNV"> </a></td><td>Copy Number Variations (CNVs)</td></tr><tr><td style="white-space:nowrap">Variant-Calls-Index<a name="data-type-Variant-Calls-Index"> </a></td><td>Variant Calls Index</td></tr><tr><td style="white-space:nowrap">Joint-Genotype-SNV<a name="data-type-Joint-Genotype-SNV"> </a></td><td>Joint Genotype SNV</td></tr><tr><td style="white-space:nowrap">Annotated-SNV<a name="data-type-Annotated-SNV"> </a></td><td>Annotated SNV</td></tr><tr><td style="white-space:nowrap">Quality-Control-Metrics<a name="data-type-Quality-Control-Metrics"> </a></td><td>Quality Control Metrics</td></tr><tr><td style="white-space:nowrap">Sequencing-Data-Supplement<a name="data-type-Sequencing-Data-Supplement"> </a></td><td>Sequencing Data Supplement</td></tr><tr><td style="white-space:nowrap">IGV<a name="data-type-IGV"> </a></td><td>IGV</td></tr></table></div>
  </text>
  <url value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
  <version value="0.1.0"/>
  <name value="DataType"/>
  <title value="Ferlab.bio CodeSystem/data-type"/>
  <status value="active"/>
  <experimental value="false"/>
  <date value="2026-03-24T15:55:50+00:00"/>
  <publisher value="Ferlab.bio"/>
  <contact>
    <name value="Ferlab.bio"/>
    <telecom>
      <system value="url"/>
      <value value="http://example.org/example-publisher"/>
    </telecom>
  </contact>
  <description value="Data Type"/>
  <caseSensitive value="true"/>
  <content value="complete"/>
  <count value="15"/>
  <concept>
    <code value="Raw-Sequencing-Reads"/>
    <display value="Raw Sequencing Reads"/>
    <designation>
      <use>
        <system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
        <code value="Raw-Sequencing-Reads"/>
      </use>
      <value value="Raw Sequencing Reads"/>
    </designation>
  </concept>
  <concept>
    <code value="Raw-Sequencing-Reads-R1"/>
    <display value="Raw Sequencing Reads R1"/>
    <designation>
      <use>
        <system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
        <code value="Raw-Sequencing-Reads-R1"/>
      </use>
      <value value="Raw Sequencing Reads R1"/>
    </designation>
  </concept>
  <concept>
    <code value="Raw-Sequencing-Reads-R2"/>
    <display value="Raw Sequencing Reads R2"/>
    <designation>
      <use>
        <system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
        <code value="Raw-Sequencing-Reads-R2"/>
      </use>
      <value value="Raw Sequencing Reads R2"/>
    </designation>
  </concept>
  <concept>
    <code value="Aligned-Reads"/>
    <display value="Aligned Reads"/>
    <designation>
      <use>
        <system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
        <code value="Aligned-Reads"/>
      </use>
      <value value="Aligned Reads"/>
    </designation>
  </concept>
  <concept>
    <code value="Aligned-Reads-Index"/>
    <display value="Aligned Reads Index"/>
    <designation>
      <use>
        <system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
        <code value="Aligned-Reads-Index"/>
      </use>
      <value value="Aligned Reads Index"/>
    </designation>
  </concept>
  <concept>
    <code value="SNV"/>
    <display value="Single Nucleotide Variants (SNVs)"/>
    <designation>
      <use>
        <system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
        <code value="SNV"/>
      </use>
      <value value="Single Nucleotide Variants (SNVs)"/>
    </designation>
  </concept>
  <concept>
    <code value="InDel"/>
    <display value="Insertions and Deletions (InDels)"/>
    <designation>
      <use>
        <system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
        <code value="InDel"/>
      </use>
      <value value="Insertions and Deletions (InDels)"/>
    </designation>
  </concept>
  <concept>
    <code value="SV"/>
    <display value="Structural Variations (SVs)"/>
    <designation>
      <use>
        <system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
        <code value="SV"/>
      </use>
      <value value="Structural Variations (SVs)"/>
    </designation>
  </concept>
  <concept>
    <code value="CNV"/>
    <display value="Copy Number Variations (CNVs)"/>
    <designation>
      <use>
        <system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
        <code value="CNV"/>
      </use>
      <value value="Copy Number Variations (CNVs)"/>
    </designation>
  </concept>
  <concept>
    <code value="Variant-Calls-Index"/>
    <display value="Variant Calls Index"/>
    <designation>
      <use>
        <system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
        <code value="Variant-Calls-Index"/>
      </use>
      <value value="Variant Calls Index"/>
    </designation>
  </concept>
  <concept>
    <code value="Joint-Genotype-SNV"/>
    <display value="Joint Genotype SNV"/>
    <designation>
      <use>
        <system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
        <code value="Joint-Genotype-SNV"/>
      </use>
      <value value="Joint Genotype SNV"/>
    </designation>
  </concept>
  <concept>
    <code value="Annotated-SNV"/>
    <display value="Annotated SNV"/>
    <designation>
      <use>
        <system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
        <code value="Annotated-SNV"/>
      </use>
      <value value="Annotated SNV"/>
    </designation>
  </concept>
  <concept>
    <code value="Quality-Control-Metrics"/>
    <display value="Quality Control Metrics"/>
    <designation>
      <use>
        <system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
        <code value="Quality-Control-Metrics"/>
      </use>
      <value value="Quality Control Metrics"/>
    </designation>
  </concept>
  <concept>
    <code value="Sequencing-Data-Supplement"/>
    <display value="Sequencing Data Supplement"/>
    <designation>
      <use>
        <system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
        <code value="Sequencing-Data-Supplement"/>
      </use>
      <value value="Sequencing Data Supplement"/>
    </designation>
  </concept>
  <concept>
    <code value="IGV"/>
    <display value="IGV"/>
    <designation>
      <use>
        <system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
        <code value="IGV"/>
      </use>
      <value value="IGV"/>
    </designation>
  </concept>
</CodeSystem>