0.1.0 - ci-build
CQDG_FHIR_IG - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions
| Active as of 2026-08-05 |
<CodeSystem xmlns="http://hl7.org/fhir">
<id value="data-type"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: CodeSystem data-type</b></p><a name="data-type"> </a><a name="hcdata-type"> </a><p>This case-sensitive code system <code>https://fhir.cqdg.ca/CodeSystem/data-type</code> defines the following codes:</p><table class="codes"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td></tr><tr><td style="white-space:nowrap">Raw-Sequencing-Reads<a name="data-type-Raw-Sequencing-Reads"> </a></td><td>Raw Sequencing Reads</td></tr><tr><td style="white-space:nowrap">Unaligned-Reads-Index<a name="data-type-Unaligned-Reads-Index"> </a></td><td>Unaligned Reads Index</td></tr><tr><td style="white-space:nowrap">Raw-Sequencing-Reads-R1<a name="data-type-Raw-Sequencing-Reads-R1"> </a></td><td>Raw Sequencing Reads R1</td></tr><tr><td style="white-space:nowrap">Raw-Sequencing-Reads-R2<a name="data-type-Raw-Sequencing-Reads-R2"> </a></td><td>Raw Sequencing Reads R2</td></tr><tr><td style="white-space:nowrap">Aligned-Reads<a name="data-type-Aligned-Reads"> </a></td><td>Aligned Reads</td></tr><tr><td style="white-space:nowrap">Aligned-Reads-Index<a name="data-type-Aligned-Reads-Index"> </a></td><td>Aligned Reads Index</td></tr><tr><td style="white-space:nowrap">SNV<a name="data-type-SNV"> </a></td><td>Single Nucleotide Variants (SNVs)</td></tr><tr><td style="white-space:nowrap">InDel<a name="data-type-InDel"> </a></td><td>Insertions and Deletions (InDels)</td></tr><tr><td style="white-space:nowrap">SV<a name="data-type-SV"> </a></td><td>Structural Variations (SVs)</td></tr><tr><td style="white-space:nowrap">CNV<a name="data-type-CNV"> </a></td><td>Copy Number Variations (CNVs)</td></tr><tr><td style="white-space:nowrap">Variant-Calls-Index<a name="data-type-Variant-Calls-Index"> </a></td><td>Variant Calls Index</td></tr><tr><td style="white-space:nowrap">Joint-Genotype-SNV<a name="data-type-Joint-Genotype-SNV"> </a></td><td>Joint Genotype SNV</td></tr><tr><td style="white-space:nowrap">Annotated-SNV<a name="data-type-Annotated-SNV"> </a></td><td>Annotated SNV</td></tr><tr><td style="white-space:nowrap">Quality-Control-Metrics<a name="data-type-Quality-Control-Metrics"> </a></td><td>Quality Control Metrics</td></tr><tr><td style="white-space:nowrap">Sequencing-Data-Supplement<a name="data-type-Sequencing-Data-Supplement"> </a></td><td>Sequencing Data Supplement</td></tr><tr><td style="white-space:nowrap">IGV<a name="data-type-IGV"> </a></td><td>IGV</td></tr><tr><td style="white-space:nowrap">Laboratory-Values<a name="data-type-Laboratory-Values"> </a></td><td>Laboratory Values</td></tr><tr><td style="white-space:nowrap">Raw-Sequencing-Reads-I1<a name="data-type-Raw-Sequencing-Reads-I1"> </a></td><td>Raw Sequencing Reads I1</td></tr><tr><td style="white-space:nowrap">Raw-Sequencing-Reads-I2<a name="data-type-Raw-Sequencing-Reads-I2"> </a></td><td>Raw Sequencing Reads I2</td></tr><tr><td style="white-space:nowrap">Processed-Reads<a name="data-type-Processed-Reads"> </a></td><td>Processed Reads</td></tr><tr><td style="white-space:nowrap">Processed-Reads-Index<a name="data-type-Processed-Reads-Index"> </a></td><td>Processed Reads Index</td></tr><tr><td style="white-space:nowrap">De-Novo-Assembly-Aligned-Reads<a name="data-type-De-Novo-Assembly-Aligned-Reads"> </a></td><td>De Novo Assembly Aligned Reads</td></tr><tr><td style="white-space:nowrap">De-Novo-Assembly-Aligned-Reads-Index<a name="data-type-De-Novo-Assembly-Aligned-Reads-Index"> </a></td><td>De Novo Assembly Aligned Reads Index</td></tr><tr><td style="white-space:nowrap">Methylation-Calls<a name="data-type-Methylation-Calls"> </a></td><td>Methylation Calls</td></tr><tr><td style="white-space:nowrap">Methylation-Calls-Index<a name="data-type-Methylation-Calls-Index"> </a></td><td>Methylation Calls Index</td></tr><tr><td style="white-space:nowrap">Raw-Feature-Count-Matrix<a name="data-type-Raw-Feature-Count-Matrix"> </a></td><td>Raw Feature Count Matrix</td></tr><tr><td style="white-space:nowrap">Filtered-Feature-Count-Matrix<a name="data-type-Filtered-Feature-Count-Matrix"> </a></td><td>Filtered Feature Count Matrix</td></tr><tr><td style="white-space:nowrap">Raw-Peak-Barcode-Matrix<a name="data-type-Raw-Peak-Barcode-Matrix"> </a></td><td>Raw Peak Barcode Matrix</td></tr><tr><td style="white-space:nowrap">Filtered-Peak-Barcode-Matrix<a name="data-type-Filtered-Peak-Barcode-Matrix"> </a></td><td>Filtered Peak Barcode Matrix</td></tr><tr><td style="white-space:nowrap">Peak-Calls<a name="data-type-Peak-Calls"> </a></td><td>Peak Calls</td></tr><tr><td style="white-space:nowrap">Peak-Calls-Index<a name="data-type-Peak-Calls-Index"> </a></td><td>Peak Calls Index</td></tr><tr><td style="white-space:nowrap">Annotated-Peaks<a name="data-type-Annotated-Peaks"> </a></td><td>Annotated Peaks</td></tr><tr><td style="white-space:nowrap">Tandem-Repeats<a name="data-type-Tandem-Repeats"> </a></td><td>Tandem Repeats (TRs)</td></tr><tr><td style="white-space:nowrap">Secondary-Analysis<a name="data-type-Secondary-Analysis"> </a></td><td>Secondary Analysis</td></tr><tr><td style="white-space:nowrap">Gene-Annotations<a name="data-type-Gene-Annotations"> </a></td><td>Gene Annotations</td></tr><tr><td style="white-space:nowrap">Pedigree<a name="data-type-Pedigree"> </a></td><td>Pedigree</td></tr><tr><td style="white-space:nowrap">Psychiatric-Assessment-Scores<a name="data-type-Psychiatric-Assessment-Scores"> </a></td><td>Psychiatric Assessment Scores</td></tr></table></div>
</text>
<url value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<version value="0.1.0"/>
<name value="DataType"/>
<title value="Ferlab.bio CodeSystem/data-type"/>
<status value="active"/>
<experimental value="false"/>
<date value="2026-08-05T14:46:26+00:00"/>
<publisher value="Ferlab.bio"/>
<contact>
<name value="Ferlab.bio"/>
<telecom>
<system value="url"/>
<value value="http://example.org/example-publisher"/>
</telecom>
</contact>
<description value="Data Type"/>
<caseSensitive value="true"/>
<content value="complete"/>
<count value="37"/>
<concept>
<code value="Raw-Sequencing-Reads"/>
<display value="Raw Sequencing Reads"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Raw-Sequencing-Reads"/>
</use>
<value value="Raw Sequencing Reads"/>
</designation>
</concept>
<concept>
<code value="Unaligned-Reads-Index"/>
<display value="Unaligned Reads Index"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Unaligned-Reads-Index"/>
</use>
<value value="Unaligned Reads Index"/>
</designation>
</concept>
<concept>
<code value="Raw-Sequencing-Reads-R1"/>
<display value="Raw Sequencing Reads R1"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Raw-Sequencing-Reads-R1"/>
</use>
<value value="Raw Sequencing Reads R1"/>
</designation>
</concept>
<concept>
<code value="Raw-Sequencing-Reads-R2"/>
<display value="Raw Sequencing Reads R2"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Raw-Sequencing-Reads-R2"/>
</use>
<value value="Raw Sequencing Reads R2"/>
</designation>
</concept>
<concept>
<code value="Aligned-Reads"/>
<display value="Aligned Reads"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Aligned-Reads"/>
</use>
<value value="Aligned Reads"/>
</designation>
</concept>
<concept>
<code value="Aligned-Reads-Index"/>
<display value="Aligned Reads Index"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Aligned-Reads-Index"/>
</use>
<value value="Aligned Reads Index"/>
</designation>
</concept>
<concept>
<code value="SNV"/>
<display value="Single Nucleotide Variants (SNVs)"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="SNV"/>
</use>
<value value="Single Nucleotide Variants (SNVs)"/>
</designation>
</concept>
<concept>
<code value="InDel"/>
<display value="Insertions and Deletions (InDels)"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="InDel"/>
</use>
<value value="Insertions and Deletions (InDels)"/>
</designation>
</concept>
<concept>
<code value="SV"/>
<display value="Structural Variations (SVs)"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="SV"/>
</use>
<value value="Structural Variations (SVs)"/>
</designation>
</concept>
<concept>
<code value="CNV"/>
<display value="Copy Number Variations (CNVs)"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="CNV"/>
</use>
<value value="Copy Number Variations (CNVs)"/>
</designation>
</concept>
<concept>
<code value="Variant-Calls-Index"/>
<display value="Variant Calls Index"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Variant-Calls-Index"/>
</use>
<value value="Variant Calls Index"/>
</designation>
</concept>
<concept>
<code value="Joint-Genotype-SNV"/>
<display value="Joint Genotype SNV"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Joint-Genotype-SNV"/>
</use>
<value value="Joint Genotype SNV"/>
</designation>
</concept>
<concept>
<code value="Annotated-SNV"/>
<display value="Annotated SNV"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Annotated-SNV"/>
</use>
<value value="Annotated SNV"/>
</designation>
</concept>
<concept>
<code value="Quality-Control-Metrics"/>
<display value="Quality Control Metrics"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Quality-Control-Metrics"/>
</use>
<value value="Quality Control Metrics"/>
</designation>
</concept>
<concept>
<code value="Sequencing-Data-Supplement"/>
<display value="Sequencing Data Supplement"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Sequencing-Data-Supplement"/>
</use>
<value value="Sequencing Data Supplement"/>
</designation>
</concept>
<concept>
<code value="IGV"/>
<display value="IGV"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="IGV"/>
</use>
<value value="IGV"/>
</designation>
</concept>
<concept>
<code value="Laboratory-Values"/>
<display value="Laboratory Values"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Laboratory-Values"/>
</use>
<value value="Laboratory Values"/>
</designation>
</concept>
<concept>
<code value="Raw-Sequencing-Reads-I1"/>
<display value="Raw Sequencing Reads I1"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Raw-Sequencing-Reads-I1"/>
</use>
<value value="Raw Sequencing Reads I1"/>
</designation>
</concept>
<concept>
<code value="Raw-Sequencing-Reads-I2"/>
<display value="Raw Sequencing Reads I2"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Raw-Sequencing-Reads-I2"/>
</use>
<value value="Raw Sequencing Reads I2"/>
</designation>
</concept>
<concept>
<code value="Processed-Reads"/>
<display value="Processed Reads"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Processed-Reads"/>
</use>
<value value="Processed Reads"/>
</designation>
</concept>
<concept>
<code value="Processed-Reads-Index"/>
<display value="Processed Reads Index"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Processed-Reads-Index"/>
</use>
<value value="Processed Reads Index"/>
</designation>
</concept>
<concept>
<code value="De-Novo-Assembly-Aligned-Reads"/>
<display value="De Novo Assembly Aligned Reads"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="De-Novo-Assembly-Aligned-Reads"/>
</use>
<value value="De Novo Assembly Aligned Reads"/>
</designation>
</concept>
<concept>
<code value="De-Novo-Assembly-Aligned-Reads-Index"/>
<display value="De Novo Assembly Aligned Reads Index"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="De-Novo-Assembly-Aligned-Reads-Index"/>
</use>
<value value="De Novo Assembly Aligned Reads Index"/>
</designation>
</concept>
<concept>
<code value="Methylation-Calls"/>
<display value="Methylation Calls"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Methylation-Calls"/>
</use>
<value value="Methylation Calls"/>
</designation>
</concept>
<concept>
<code value="Methylation-Calls-Index"/>
<display value="Methylation Calls Index"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Methylation-Calls-Index"/>
</use>
<value value="Methylation Calls Index"/>
</designation>
</concept>
<concept>
<code value="Raw-Feature-Count-Matrix"/>
<display value="Raw Feature Count Matrix"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Raw-Feature-Count-Matrix"/>
</use>
<value value="Raw Feature Count Matrix"/>
</designation>
</concept>
<concept>
<code value="Filtered-Feature-Count-Matrix"/>
<display value="Filtered Feature Count Matrix"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Filtered-Feature-Count-Matrix"/>
</use>
<value value="Filtered Feature Count Matrix"/>
</designation>
</concept>
<concept>
<code value="Raw-Peak-Barcode-Matrix"/>
<display value="Raw Peak Barcode Matrix"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Raw-Peak-Barcode-Matrix"/>
</use>
<value value="Raw Peak Barcode Matrix"/>
</designation>
</concept>
<concept>
<code value="Filtered-Peak-Barcode-Matrix"/>
<display value="Filtered Peak Barcode Matrix"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Filtered-Peak-Barcode-Matrix"/>
</use>
<value value="Filtered Peak Barcode Matrix"/>
</designation>
</concept>
<concept>
<code value="Peak-Calls"/>
<display value="Peak Calls"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Peak-Calls"/>
</use>
<value value="Peak Calls"/>
</designation>
</concept>
<concept>
<code value="Peak-Calls-Index"/>
<display value="Peak Calls Index"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Peak-Calls-Index"/>
</use>
<value value="Peak Calls Index"/>
</designation>
</concept>
<concept>
<code value="Annotated-Peaks"/>
<display value="Annotated Peaks"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Annotated-Peaks"/>
</use>
<value value="Annotated Peaks"/>
</designation>
</concept>
<concept>
<code value="Tandem-Repeats"/>
<display value="Tandem Repeats (TRs)"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Tandem-Repeats"/>
</use>
<value value="Tandem Repeats (TRs)"/>
</designation>
</concept>
<concept>
<code value="Secondary-Analysis"/>
<display value="Secondary Analysis"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Secondary-Analysis"/>
</use>
<value value="Secondary Analysis"/>
</designation>
</concept>
<concept>
<code value="Gene-Annotations"/>
<display value="Gene Annotations"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Gene-Annotations"/>
</use>
<value value="Gene Annotations"/>
</designation>
</concept>
<concept>
<code value="Pedigree"/>
<display value="Pedigree"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Pedigree"/>
</use>
<value value="Pedigree"/>
</designation>
</concept>
<concept>
<code value="Psychiatric-Assessment-Scores"/>
<display value="Psychiatric Assessment Scores"/>
<designation>
<use>
<system value="https://fhir.cqdg.ca/CodeSystem/data-type"/>
<code value="Psychiatric-Assessment-Scores"/>
</use>
<value value="Psychiatric Assessment Scores"/>
</designation>
</concept>
</CodeSystem>