0.1.0 - ci-build
CQDG_FHIR_IG - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions
| Active as of 2026-03-24 |
{
"resourceType" : "CodeSystem",
"id" : "data-type",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: CodeSystem data-type</b></p><a name=\"data-type\"> </a><a name=\"hcdata-type\"> </a><p>This case-sensitive code system <code>https://fhir.cqdg.ca/CodeSystem/data-type</code> defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td style=\"white-space:nowrap\">Raw-Sequencing-Reads<a name=\"data-type-Raw-Sequencing-Reads\"> </a></td><td>Raw Sequencing Reads</td></tr><tr><td style=\"white-space:nowrap\">Raw-Sequencing-Reads-R1<a name=\"data-type-Raw-Sequencing-Reads-R1\"> </a></td><td>Raw Sequencing Reads R1</td></tr><tr><td style=\"white-space:nowrap\">Raw-Sequencing-Reads-R2<a name=\"data-type-Raw-Sequencing-Reads-R2\"> </a></td><td>Raw Sequencing Reads R2</td></tr><tr><td style=\"white-space:nowrap\">Aligned-Reads<a name=\"data-type-Aligned-Reads\"> </a></td><td>Aligned Reads</td></tr><tr><td style=\"white-space:nowrap\">Aligned-Reads-Index<a name=\"data-type-Aligned-Reads-Index\"> </a></td><td>Aligned Reads Index</td></tr><tr><td style=\"white-space:nowrap\">SNV<a name=\"data-type-SNV\"> </a></td><td>Single Nucleotide Variants (SNVs)</td></tr><tr><td style=\"white-space:nowrap\">InDel<a name=\"data-type-InDel\"> </a></td><td>Insertions and Deletions (InDels)</td></tr><tr><td style=\"white-space:nowrap\">SV<a name=\"data-type-SV\"> </a></td><td>Structural Variations (SVs)</td></tr><tr><td style=\"white-space:nowrap\">CNV<a name=\"data-type-CNV\"> </a></td><td>Copy Number Variations (CNVs)</td></tr><tr><td style=\"white-space:nowrap\">Variant-Calls-Index<a name=\"data-type-Variant-Calls-Index\"> </a></td><td>Variant Calls Index</td></tr><tr><td style=\"white-space:nowrap\">Joint-Genotype-SNV<a name=\"data-type-Joint-Genotype-SNV\"> </a></td><td>Joint Genotype SNV</td></tr><tr><td style=\"white-space:nowrap\">Annotated-SNV<a name=\"data-type-Annotated-SNV\"> </a></td><td>Annotated SNV</td></tr><tr><td style=\"white-space:nowrap\">Quality-Control-Metrics<a name=\"data-type-Quality-Control-Metrics\"> </a></td><td>Quality Control Metrics</td></tr><tr><td style=\"white-space:nowrap\">Sequencing-Data-Supplement<a name=\"data-type-Sequencing-Data-Supplement\"> </a></td><td>Sequencing Data Supplement</td></tr><tr><td style=\"white-space:nowrap\">IGV<a name=\"data-type-IGV\"> </a></td><td>IGV</td></tr></table></div>"
},
"url" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"version" : "0.1.0",
"name" : "DataType",
"title" : "Ferlab.bio CodeSystem/data-type",
"status" : "active",
"experimental" : false,
"date" : "2026-03-24T15:55:50+00:00",
"publisher" : "Ferlab.bio",
"contact" : [
{
"name" : "Ferlab.bio",
"telecom" : [
{
"system" : "url",
"value" : "http://example.org/example-publisher"
}
]
}
],
"description" : "Data Type",
"caseSensitive" : true,
"content" : "complete",
"count" : 15,
"concept" : [
{
"code" : "Raw-Sequencing-Reads",
"display" : "Raw Sequencing Reads",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Raw-Sequencing-Reads"
},
"value" : "Raw Sequencing Reads"
}
]
},
{
"code" : "Raw-Sequencing-Reads-R1",
"display" : "Raw Sequencing Reads R1",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Raw-Sequencing-Reads-R1"
},
"value" : "Raw Sequencing Reads R1"
}
]
},
{
"code" : "Raw-Sequencing-Reads-R2",
"display" : "Raw Sequencing Reads R2",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Raw-Sequencing-Reads-R2"
},
"value" : "Raw Sequencing Reads R2"
}
]
},
{
"code" : "Aligned-Reads",
"display" : "Aligned Reads",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Aligned-Reads"
},
"value" : "Aligned Reads"
}
]
},
{
"code" : "Aligned-Reads-Index",
"display" : "Aligned Reads Index",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Aligned-Reads-Index"
},
"value" : "Aligned Reads Index"
}
]
},
{
"code" : "SNV",
"display" : "Single Nucleotide Variants (SNVs)",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "SNV"
},
"value" : "Single Nucleotide Variants (SNVs)"
}
]
},
{
"code" : "InDel",
"display" : "Insertions and Deletions (InDels)",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "InDel"
},
"value" : "Insertions and Deletions (InDels)"
}
]
},
{
"code" : "SV",
"display" : "Structural Variations (SVs)",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "SV"
},
"value" : "Structural Variations (SVs)"
}
]
},
{
"code" : "CNV",
"display" : "Copy Number Variations (CNVs)",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "CNV"
},
"value" : "Copy Number Variations (CNVs)"
}
]
},
{
"code" : "Variant-Calls-Index",
"display" : "Variant Calls Index",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Variant-Calls-Index"
},
"value" : "Variant Calls Index"
}
]
},
{
"code" : "Joint-Genotype-SNV",
"display" : "Joint Genotype SNV",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Joint-Genotype-SNV"
},
"value" : "Joint Genotype SNV"
}
]
},
{
"code" : "Annotated-SNV",
"display" : "Annotated SNV",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Annotated-SNV"
},
"value" : "Annotated SNV"
}
]
},
{
"code" : "Quality-Control-Metrics",
"display" : "Quality Control Metrics",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Quality-Control-Metrics"
},
"value" : "Quality Control Metrics"
}
]
},
{
"code" : "Sequencing-Data-Supplement",
"display" : "Sequencing Data Supplement",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Sequencing-Data-Supplement"
},
"value" : "Sequencing Data Supplement"
}
]
},
{
"code" : "IGV",
"display" : "IGV",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "IGV"
},
"value" : "IGV"
}
]
}
]
}