0.1.0 - ci-build
CQDG_FHIR_IG - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions
| Active as of 2026-08-05 |
{
"resourceType" : "CodeSystem",
"id" : "data-type",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: CodeSystem data-type</b></p><a name=\"data-type\"> </a><a name=\"hcdata-type\"> </a><p>This case-sensitive code system <code>https://fhir.cqdg.ca/CodeSystem/data-type</code> defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td style=\"white-space:nowrap\">Raw-Sequencing-Reads<a name=\"data-type-Raw-Sequencing-Reads\"> </a></td><td>Raw Sequencing Reads</td></tr><tr><td style=\"white-space:nowrap\">Unaligned-Reads-Index<a name=\"data-type-Unaligned-Reads-Index\"> </a></td><td>Unaligned Reads Index</td></tr><tr><td style=\"white-space:nowrap\">Raw-Sequencing-Reads-R1<a name=\"data-type-Raw-Sequencing-Reads-R1\"> </a></td><td>Raw Sequencing Reads R1</td></tr><tr><td style=\"white-space:nowrap\">Raw-Sequencing-Reads-R2<a name=\"data-type-Raw-Sequencing-Reads-R2\"> </a></td><td>Raw Sequencing Reads R2</td></tr><tr><td style=\"white-space:nowrap\">Aligned-Reads<a name=\"data-type-Aligned-Reads\"> </a></td><td>Aligned Reads</td></tr><tr><td style=\"white-space:nowrap\">Aligned-Reads-Index<a name=\"data-type-Aligned-Reads-Index\"> </a></td><td>Aligned Reads Index</td></tr><tr><td style=\"white-space:nowrap\">SNV<a name=\"data-type-SNV\"> </a></td><td>Single Nucleotide Variants (SNVs)</td></tr><tr><td style=\"white-space:nowrap\">InDel<a name=\"data-type-InDel\"> </a></td><td>Insertions and Deletions (InDels)</td></tr><tr><td style=\"white-space:nowrap\">SV<a name=\"data-type-SV\"> </a></td><td>Structural Variations (SVs)</td></tr><tr><td style=\"white-space:nowrap\">CNV<a name=\"data-type-CNV\"> </a></td><td>Copy Number Variations (CNVs)</td></tr><tr><td style=\"white-space:nowrap\">Variant-Calls-Index<a name=\"data-type-Variant-Calls-Index\"> </a></td><td>Variant Calls Index</td></tr><tr><td style=\"white-space:nowrap\">Joint-Genotype-SNV<a name=\"data-type-Joint-Genotype-SNV\"> </a></td><td>Joint Genotype SNV</td></tr><tr><td style=\"white-space:nowrap\">Annotated-SNV<a name=\"data-type-Annotated-SNV\"> </a></td><td>Annotated SNV</td></tr><tr><td style=\"white-space:nowrap\">Quality-Control-Metrics<a name=\"data-type-Quality-Control-Metrics\"> </a></td><td>Quality Control Metrics</td></tr><tr><td style=\"white-space:nowrap\">Sequencing-Data-Supplement<a name=\"data-type-Sequencing-Data-Supplement\"> </a></td><td>Sequencing Data Supplement</td></tr><tr><td style=\"white-space:nowrap\">IGV<a name=\"data-type-IGV\"> </a></td><td>IGV</td></tr><tr><td style=\"white-space:nowrap\">Laboratory-Values<a name=\"data-type-Laboratory-Values\"> </a></td><td>Laboratory Values</td></tr><tr><td style=\"white-space:nowrap\">Raw-Sequencing-Reads-I1<a name=\"data-type-Raw-Sequencing-Reads-I1\"> </a></td><td>Raw Sequencing Reads I1</td></tr><tr><td style=\"white-space:nowrap\">Raw-Sequencing-Reads-I2<a name=\"data-type-Raw-Sequencing-Reads-I2\"> </a></td><td>Raw Sequencing Reads I2</td></tr><tr><td style=\"white-space:nowrap\">Processed-Reads<a name=\"data-type-Processed-Reads\"> </a></td><td>Processed Reads</td></tr><tr><td style=\"white-space:nowrap\">Processed-Reads-Index<a name=\"data-type-Processed-Reads-Index\"> </a></td><td>Processed Reads Index</td></tr><tr><td style=\"white-space:nowrap\">De-Novo-Assembly-Aligned-Reads<a name=\"data-type-De-Novo-Assembly-Aligned-Reads\"> </a></td><td>De Novo Assembly Aligned Reads</td></tr><tr><td style=\"white-space:nowrap\">De-Novo-Assembly-Aligned-Reads-Index<a name=\"data-type-De-Novo-Assembly-Aligned-Reads-Index\"> </a></td><td>De Novo Assembly Aligned Reads Index</td></tr><tr><td style=\"white-space:nowrap\">Methylation-Calls<a name=\"data-type-Methylation-Calls\"> </a></td><td>Methylation Calls</td></tr><tr><td style=\"white-space:nowrap\">Methylation-Calls-Index<a name=\"data-type-Methylation-Calls-Index\"> </a></td><td>Methylation Calls Index</td></tr><tr><td style=\"white-space:nowrap\">Raw-Feature-Count-Matrix<a name=\"data-type-Raw-Feature-Count-Matrix\"> </a></td><td>Raw Feature Count Matrix</td></tr><tr><td style=\"white-space:nowrap\">Filtered-Feature-Count-Matrix<a name=\"data-type-Filtered-Feature-Count-Matrix\"> </a></td><td>Filtered Feature Count Matrix</td></tr><tr><td style=\"white-space:nowrap\">Raw-Peak-Barcode-Matrix<a name=\"data-type-Raw-Peak-Barcode-Matrix\"> </a></td><td>Raw Peak Barcode Matrix</td></tr><tr><td style=\"white-space:nowrap\">Filtered-Peak-Barcode-Matrix<a name=\"data-type-Filtered-Peak-Barcode-Matrix\"> </a></td><td>Filtered Peak Barcode Matrix</td></tr><tr><td style=\"white-space:nowrap\">Peak-Calls<a name=\"data-type-Peak-Calls\"> </a></td><td>Peak Calls</td></tr><tr><td style=\"white-space:nowrap\">Peak-Calls-Index<a name=\"data-type-Peak-Calls-Index\"> </a></td><td>Peak Calls Index</td></tr><tr><td style=\"white-space:nowrap\">Annotated-Peaks<a name=\"data-type-Annotated-Peaks\"> </a></td><td>Annotated Peaks</td></tr><tr><td style=\"white-space:nowrap\">Tandem-Repeats<a name=\"data-type-Tandem-Repeats\"> </a></td><td>Tandem Repeats (TRs)</td></tr><tr><td style=\"white-space:nowrap\">Secondary-Analysis<a name=\"data-type-Secondary-Analysis\"> </a></td><td>Secondary Analysis</td></tr><tr><td style=\"white-space:nowrap\">Gene-Annotations<a name=\"data-type-Gene-Annotations\"> </a></td><td>Gene Annotations</td></tr><tr><td style=\"white-space:nowrap\">Pedigree<a name=\"data-type-Pedigree\"> </a></td><td>Pedigree</td></tr><tr><td style=\"white-space:nowrap\">Psychiatric-Assessment-Scores<a name=\"data-type-Psychiatric-Assessment-Scores\"> </a></td><td>Psychiatric Assessment Scores</td></tr></table></div>"
},
"url" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"version" : "0.1.0",
"name" : "DataType",
"title" : "Ferlab.bio CodeSystem/data-type",
"status" : "active",
"experimental" : false,
"date" : "2026-08-05T14:46:26+00:00",
"publisher" : "Ferlab.bio",
"contact" : [
{
"name" : "Ferlab.bio",
"telecom" : [
{
"system" : "url",
"value" : "http://example.org/example-publisher"
}
]
}
],
"description" : "Data Type",
"caseSensitive" : true,
"content" : "complete",
"count" : 37,
"concept" : [
{
"code" : "Raw-Sequencing-Reads",
"display" : "Raw Sequencing Reads",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Raw-Sequencing-Reads"
},
"value" : "Raw Sequencing Reads"
}
]
},
{
"code" : "Unaligned-Reads-Index",
"display" : "Unaligned Reads Index",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Unaligned-Reads-Index"
},
"value" : "Unaligned Reads Index"
}
]
},
{
"code" : "Raw-Sequencing-Reads-R1",
"display" : "Raw Sequencing Reads R1",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Raw-Sequencing-Reads-R1"
},
"value" : "Raw Sequencing Reads R1"
}
]
},
{
"code" : "Raw-Sequencing-Reads-R2",
"display" : "Raw Sequencing Reads R2",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Raw-Sequencing-Reads-R2"
},
"value" : "Raw Sequencing Reads R2"
}
]
},
{
"code" : "Aligned-Reads",
"display" : "Aligned Reads",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Aligned-Reads"
},
"value" : "Aligned Reads"
}
]
},
{
"code" : "Aligned-Reads-Index",
"display" : "Aligned Reads Index",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Aligned-Reads-Index"
},
"value" : "Aligned Reads Index"
}
]
},
{
"code" : "SNV",
"display" : "Single Nucleotide Variants (SNVs)",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "SNV"
},
"value" : "Single Nucleotide Variants (SNVs)"
}
]
},
{
"code" : "InDel",
"display" : "Insertions and Deletions (InDels)",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "InDel"
},
"value" : "Insertions and Deletions (InDels)"
}
]
},
{
"code" : "SV",
"display" : "Structural Variations (SVs)",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "SV"
},
"value" : "Structural Variations (SVs)"
}
]
},
{
"code" : "CNV",
"display" : "Copy Number Variations (CNVs)",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "CNV"
},
"value" : "Copy Number Variations (CNVs)"
}
]
},
{
"code" : "Variant-Calls-Index",
"display" : "Variant Calls Index",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Variant-Calls-Index"
},
"value" : "Variant Calls Index"
}
]
},
{
"code" : "Joint-Genotype-SNV",
"display" : "Joint Genotype SNV",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Joint-Genotype-SNV"
},
"value" : "Joint Genotype SNV"
}
]
},
{
"code" : "Annotated-SNV",
"display" : "Annotated SNV",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Annotated-SNV"
},
"value" : "Annotated SNV"
}
]
},
{
"code" : "Quality-Control-Metrics",
"display" : "Quality Control Metrics",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Quality-Control-Metrics"
},
"value" : "Quality Control Metrics"
}
]
},
{
"code" : "Sequencing-Data-Supplement",
"display" : "Sequencing Data Supplement",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Sequencing-Data-Supplement"
},
"value" : "Sequencing Data Supplement"
}
]
},
{
"code" : "IGV",
"display" : "IGV",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "IGV"
},
"value" : "IGV"
}
]
},
{
"code" : "Laboratory-Values",
"display" : "Laboratory Values",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Laboratory-Values"
},
"value" : "Laboratory Values"
}
]
},
{
"code" : "Raw-Sequencing-Reads-I1",
"display" : "Raw Sequencing Reads I1",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Raw-Sequencing-Reads-I1"
},
"value" : "Raw Sequencing Reads I1"
}
]
},
{
"code" : "Raw-Sequencing-Reads-I2",
"display" : "Raw Sequencing Reads I2",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Raw-Sequencing-Reads-I2"
},
"value" : "Raw Sequencing Reads I2"
}
]
},
{
"code" : "Processed-Reads",
"display" : "Processed Reads",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Processed-Reads"
},
"value" : "Processed Reads"
}
]
},
{
"code" : "Processed-Reads-Index",
"display" : "Processed Reads Index",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Processed-Reads-Index"
},
"value" : "Processed Reads Index"
}
]
},
{
"code" : "De-Novo-Assembly-Aligned-Reads",
"display" : "De Novo Assembly Aligned Reads",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "De-Novo-Assembly-Aligned-Reads"
},
"value" : "De Novo Assembly Aligned Reads"
}
]
},
{
"code" : "De-Novo-Assembly-Aligned-Reads-Index",
"display" : "De Novo Assembly Aligned Reads Index",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "De-Novo-Assembly-Aligned-Reads-Index"
},
"value" : "De Novo Assembly Aligned Reads Index"
}
]
},
{
"code" : "Methylation-Calls",
"display" : "Methylation Calls",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Methylation-Calls"
},
"value" : "Methylation Calls"
}
]
},
{
"code" : "Methylation-Calls-Index",
"display" : "Methylation Calls Index",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Methylation-Calls-Index"
},
"value" : "Methylation Calls Index"
}
]
},
{
"code" : "Raw-Feature-Count-Matrix",
"display" : "Raw Feature Count Matrix",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Raw-Feature-Count-Matrix"
},
"value" : "Raw Feature Count Matrix"
}
]
},
{
"code" : "Filtered-Feature-Count-Matrix",
"display" : "Filtered Feature Count Matrix",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Filtered-Feature-Count-Matrix"
},
"value" : "Filtered Feature Count Matrix"
}
]
},
{
"code" : "Raw-Peak-Barcode-Matrix",
"display" : "Raw Peak Barcode Matrix",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Raw-Peak-Barcode-Matrix"
},
"value" : "Raw Peak Barcode Matrix"
}
]
},
{
"code" : "Filtered-Peak-Barcode-Matrix",
"display" : "Filtered Peak Barcode Matrix",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Filtered-Peak-Barcode-Matrix"
},
"value" : "Filtered Peak Barcode Matrix"
}
]
},
{
"code" : "Peak-Calls",
"display" : "Peak Calls",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Peak-Calls"
},
"value" : "Peak Calls"
}
]
},
{
"code" : "Peak-Calls-Index",
"display" : "Peak Calls Index",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Peak-Calls-Index"
},
"value" : "Peak Calls Index"
}
]
},
{
"code" : "Annotated-Peaks",
"display" : "Annotated Peaks",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Annotated-Peaks"
},
"value" : "Annotated Peaks"
}
]
},
{
"code" : "Tandem-Repeats",
"display" : "Tandem Repeats (TRs)",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Tandem-Repeats"
},
"value" : "Tandem Repeats (TRs)"
}
]
},
{
"code" : "Secondary-Analysis",
"display" : "Secondary Analysis",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Secondary-Analysis"
},
"value" : "Secondary Analysis"
}
]
},
{
"code" : "Gene-Annotations",
"display" : "Gene Annotations",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Gene-Annotations"
},
"value" : "Gene Annotations"
}
]
},
{
"code" : "Pedigree",
"display" : "Pedigree",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Pedigree"
},
"value" : "Pedigree"
}
]
},
{
"code" : "Psychiatric-Assessment-Scores",
"display" : "Psychiatric Assessment Scores",
"designation" : [
{
"use" : {
"system" : "https://fhir.cqdg.ca/CodeSystem/data-type",
"code" : "Psychiatric-Assessment-Scores"
},
"value" : "Psychiatric Assessment Scores"
}
]
}
]
}