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: Ferlab.bio CodeSystem/document-format - TTL Representation

Active as of 2026-08-05

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/CodeSystem/document-format> a fhir:CodeSystem ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:Resource.id [ fhir:value "document-format"] ;
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ] ;
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: CodeSystem document-format</b></p><a name=\"document-format\"> </a><a name=\"hcdocument-format\"> </a><p>This case-sensitive code system <code>https://fhir.cqdg.ca/CodeSystem/document-format</code> defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>French (fr)</b></td></tr><tr><td style=\"white-space:nowrap\">FASTQ<a name=\"document-format-FASTQ\"> </a></td><td>FASTQ File</td><td>FASTQ</td></tr><tr><td style=\"white-space:nowrap\">CRAM<a name=\"document-format-CRAM\"> </a></td><td>CRAM</td><td>CRAM</td></tr><tr><td style=\"white-space:nowrap\">CRAI<a name=\"document-format-CRAI\"> </a></td><td>CRAI Index File</td><td>CRAI</td></tr><tr><td style=\"white-space:nowrap\">BAM<a name=\"document-format-BAM\"> </a></td><td>BAM File</td><td>BAM</td></tr><tr><td style=\"white-space:nowrap\">BAI<a name=\"document-format-BAI\"> </a></td><td>BAI Index File</td><td>BAI</td></tr><tr><td style=\"white-space:nowrap\">VCF<a name=\"document-format-VCF\"> </a></td><td>VCF</td><td>VCF</td></tr><tr><td style=\"white-space:nowrap\">gVCF<a name=\"document-format-gVCF\"> </a></td><td>gVCF File</td><td>gVCF</td></tr><tr><td style=\"white-space:nowrap\">TBI<a name=\"document-format-TBI\"> </a></td><td>TBI Index File</td><td>TBI</td></tr><tr><td style=\"white-space:nowrap\">TGZ<a name=\"document-format-TGZ\"> </a></td><td>TGZ Archive File</td><td>TGZ</td></tr><tr><td style=\"white-space:nowrap\">bigWig<a name=\"document-format-bigWig\"> </a></td><td>bigWig File</td><td>bigWig</td></tr><tr><td style=\"white-space:nowrap\">BED<a name=\"document-format-BED\"> </a></td><td>BED File</td><td>BED</td></tr><tr><td style=\"white-space:nowrap\">CSV<a name=\"document-format-CSV\"> </a></td><td>CSV File</td><td>CSV</td></tr><tr><td style=\"white-space:nowrap\">TSV<a name=\"document-format-TSV\"> </a></td><td>TSV File</td><td>TSV</td></tr><tr><td style=\"white-space:nowrap\">POD5<a name=\"document-format-POD5\"> </a></td><td>POD5 File</td><td>POD5</td></tr><tr><td style=\"white-space:nowrap\">HDF5<a name=\"document-format-HDF5\"> </a></td><td>HDF5 File</td><td>HDF5</td></tr><tr><td style=\"white-space:nowrap\">cloupe<a name=\"document-format-cloupe\"> </a></td><td>cloupe File</td><td>cloupe</td></tr><tr><td style=\"white-space:nowrap\">GFF<a name=\"document-format-GFF\"> </a></td><td>GFF File</td><td>GFF</td></tr><tr><td style=\"white-space:nowrap\">GTF<a name=\"document-format-GTF\"> </a></td><td>GTF File</td><td>GTF</td></tr><tr><td style=\"white-space:nowrap\">FAM<a name=\"document-format-FAM\"> </a></td><td>FAM Pedigree File</td><td>FAM</td></tr><tr><td style=\"white-space:nowrap\">HTML<a name=\"document-format-HTML\"> </a></td><td>HTML File</td><td>HTML</td></tr><tr><td style=\"white-space:nowrap\">JSON<a name=\"document-format-JSON\"> </a></td><td>JSON File</td><td>JSON</td></tr></table></div>"
  ] ;
  fhir:CodeSystem.url [ fhir:value "https://fhir.cqdg.ca/CodeSystem/document-format"] ;
  fhir:CodeSystem.version [ fhir:value "0.1.0"] ;
  fhir:CodeSystem.name [ fhir:value "DocumentFormat"] ;
  fhir:CodeSystem.title [ fhir:value "Ferlab.bio CodeSystem/document-format"] ;
  fhir:CodeSystem.status [ fhir:value "active"] ;
  fhir:CodeSystem.experimental [ fhir:value "false"^^xsd:boolean] ;
  fhir:CodeSystem.date [ fhir:value "2026-08-05T14:46:26+00:00"^^xsd:dateTime] ;
  fhir:CodeSystem.publisher [ fhir:value "Ferlab.bio"] ;
  fhir:CodeSystem.contact [
     fhir:index 0 ;
     fhir:ContactDetail.name [ fhir:value "Ferlab.bio" ] ;
     fhir:ContactDetail.telecom [
       fhir:index 0 ;
       fhir:ContactPoint.system [ fhir:value "url" ] ;
       fhir:ContactPoint.value [ fhir:value "http://example.org/example-publisher" ]
     ]
  ] ;
  fhir:CodeSystem.description [ fhir:value "Document format"] ;
  fhir:CodeSystem.caseSensitive [ fhir:value "true"^^xsd:boolean] ;
  fhir:CodeSystem.content [ fhir:value "complete"] ;
  fhir:CodeSystem.count [ fhir:value "21"^^xsd:nonNegativeInteger] ;
  fhir:CodeSystem.concept [
     fhir:index 0 ;
     fhir:CodeSystem.concept.code [ fhir:value "FASTQ" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "FASTQ File" ] ;
     fhir:CodeSystem.concept.designation [
       fhir:index 0 ;
       fhir:CodeSystem.concept.designation.language [ fhir:value "fr" ] ;
       fhir:CodeSystem.concept.designation.value [ fhir:value "FASTQ" ]
     ]
  ], [
     fhir:index 1 ;
     fhir:CodeSystem.concept.code [ fhir:value "CRAM" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "CRAM" ] ;
     fhir:CodeSystem.concept.designation [
       fhir:index 0 ;
       fhir:CodeSystem.concept.designation.language [ fhir:value "fr" ] ;
       fhir:CodeSystem.concept.designation.value [ fhir:value "CRAM" ]
     ]
  ], [
     fhir:index 2 ;
     fhir:CodeSystem.concept.code [ fhir:value "CRAI" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "CRAI Index File" ] ;
     fhir:CodeSystem.concept.designation [
       fhir:index 0 ;
       fhir:CodeSystem.concept.designation.language [ fhir:value "fr" ] ;
       fhir:CodeSystem.concept.designation.value [ fhir:value "CRAI" ]
     ]
  ], [
     fhir:index 3 ;
     fhir:CodeSystem.concept.code [ fhir:value "BAM" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "BAM File" ] ;
     fhir:CodeSystem.concept.designation [
       fhir:index 0 ;
       fhir:CodeSystem.concept.designation.language [ fhir:value "fr" ] ;
       fhir:CodeSystem.concept.designation.value [ fhir:value "BAM" ]
     ]
  ], [
     fhir:index 4 ;
     fhir:CodeSystem.concept.code [ fhir:value "BAI" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "BAI Index File" ] ;
     fhir:CodeSystem.concept.designation [
       fhir:index 0 ;
       fhir:CodeSystem.concept.designation.language [ fhir:value "fr" ] ;
       fhir:CodeSystem.concept.designation.value [ fhir:value "BAI" ]
     ]
  ], [
     fhir:index 5 ;
     fhir:CodeSystem.concept.code [ fhir:value "VCF" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "VCF" ] ;
     fhir:CodeSystem.concept.designation [
       fhir:index 0 ;
       fhir:CodeSystem.concept.designation.language [ fhir:value "fr" ] ;
       fhir:CodeSystem.concept.designation.value [ fhir:value "VCF" ]
     ]
  ], [
     fhir:index 6 ;
     fhir:CodeSystem.concept.code [ fhir:value "gVCF" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "gVCF File" ] ;
     fhir:CodeSystem.concept.designation [
       fhir:index 0 ;
       fhir:CodeSystem.concept.designation.language [ fhir:value "fr" ] ;
       fhir:CodeSystem.concept.designation.value [ fhir:value "gVCF" ]
     ]
  ], [
     fhir:index 7 ;
     fhir:CodeSystem.concept.code [ fhir:value "TBI" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "TBI Index File" ] ;
     fhir:CodeSystem.concept.designation [
       fhir:index 0 ;
       fhir:CodeSystem.concept.designation.language [ fhir:value "fr" ] ;
       fhir:CodeSystem.concept.designation.value [ fhir:value "TBI" ]
     ]
  ], [
     fhir:index 8 ;
     fhir:CodeSystem.concept.code [ fhir:value "TGZ" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "TGZ Archive File" ] ;
     fhir:CodeSystem.concept.designation [
       fhir:index 0 ;
       fhir:CodeSystem.concept.designation.language [ fhir:value "fr" ] ;
       fhir:CodeSystem.concept.designation.value [ fhir:value "TGZ" ]
     ]
  ], [
     fhir:index 9 ;
     fhir:CodeSystem.concept.code [ fhir:value "bigWig" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "bigWig File" ] ;
     fhir:CodeSystem.concept.designation [
       fhir:index 0 ;
       fhir:CodeSystem.concept.designation.language [ fhir:value "fr" ] ;
       fhir:CodeSystem.concept.designation.value [ fhir:value "bigWig" ]
     ]
  ], [
     fhir:index 10 ;
     fhir:CodeSystem.concept.code [ fhir:value "BED" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "BED File" ] ;
     fhir:CodeSystem.concept.designation [
       fhir:index 0 ;
       fhir:CodeSystem.concept.designation.language [ fhir:value "fr" ] ;
       fhir:CodeSystem.concept.designation.value [ fhir:value "BED" ]
     ]
  ], [
     fhir:index 11 ;
     fhir:CodeSystem.concept.code [ fhir:value "CSV" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "CSV File" ] ;
     fhir:CodeSystem.concept.designation [
       fhir:index 0 ;
       fhir:CodeSystem.concept.designation.language [ fhir:value "fr" ] ;
       fhir:CodeSystem.concept.designation.value [ fhir:value "CSV" ]
     ]
  ], [
     fhir:index 12 ;
     fhir:CodeSystem.concept.code [ fhir:value "TSV" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "TSV File" ] ;
     fhir:CodeSystem.concept.designation [
       fhir:index 0 ;
       fhir:CodeSystem.concept.designation.language [ fhir:value "fr" ] ;
       fhir:CodeSystem.concept.designation.value [ fhir:value "TSV" ]
     ]
  ], [
     fhir:index 13 ;
     fhir:CodeSystem.concept.code [ fhir:value "POD5" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "POD5 File" ] ;
     fhir:CodeSystem.concept.designation [
       fhir:index 0 ;
       fhir:CodeSystem.concept.designation.language [ fhir:value "fr" ] ;
       fhir:CodeSystem.concept.designation.value [ fhir:value "POD5" ]
     ]
  ], [
     fhir:index 14 ;
     fhir:CodeSystem.concept.code [ fhir:value "HDF5" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "HDF5 File" ] ;
     fhir:CodeSystem.concept.designation [
       fhir:index 0 ;
       fhir:CodeSystem.concept.designation.language [ fhir:value "fr" ] ;
       fhir:CodeSystem.concept.designation.value [ fhir:value "HDF5" ]
     ]
  ], [
     fhir:index 15 ;
     fhir:CodeSystem.concept.code [ fhir:value "cloupe" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "cloupe File" ] ;
     fhir:CodeSystem.concept.designation [
       fhir:index 0 ;
       fhir:CodeSystem.concept.designation.language [ fhir:value "fr" ] ;
       fhir:CodeSystem.concept.designation.value [ fhir:value "cloupe" ]
     ]
  ], [
     fhir:index 16 ;
     fhir:CodeSystem.concept.code [ fhir:value "GFF" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "GFF File" ] ;
     fhir:CodeSystem.concept.designation [
       fhir:index 0 ;
       fhir:CodeSystem.concept.designation.language [ fhir:value "fr" ] ;
       fhir:CodeSystem.concept.designation.value [ fhir:value "GFF" ]
     ]
  ], [
     fhir:index 17 ;
     fhir:CodeSystem.concept.code [ fhir:value "GTF" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "GTF File" ] ;
     fhir:CodeSystem.concept.designation [
       fhir:index 0 ;
       fhir:CodeSystem.concept.designation.language [ fhir:value "fr" ] ;
       fhir:CodeSystem.concept.designation.value [ fhir:value "GTF" ]
     ]
  ], [
     fhir:index 18 ;
     fhir:CodeSystem.concept.code [ fhir:value "FAM" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "FAM Pedigree File" ] ;
     fhir:CodeSystem.concept.designation [
       fhir:index 0 ;
       fhir:CodeSystem.concept.designation.language [ fhir:value "fr" ] ;
       fhir:CodeSystem.concept.designation.value [ fhir:value "FAM" ]
     ]
  ], [
     fhir:index 19 ;
     fhir:CodeSystem.concept.code [ fhir:value "HTML" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "HTML File" ] ;
     fhir:CodeSystem.concept.designation [
       fhir:index 0 ;
       fhir:CodeSystem.concept.designation.language [ fhir:value "fr" ] ;
       fhir:CodeSystem.concept.designation.value [ fhir:value "HTML" ]
     ]
  ], [
     fhir:index 20 ;
     fhir:CodeSystem.concept.code [ fhir:value "JSON" ] ;
     fhir:CodeSystem.concept.display [ fhir:value "JSON File" ] ;
     fhir:CodeSystem.concept.designation [
       fhir:index 0 ;
       fhir:CodeSystem.concept.designation.language [ fhir:value "fr" ] ;
       fhir:CodeSystem.concept.designation.value [ fhir:value "JSON" ]
     ]
  ] .

# - ontology header ------------------------------------------------------------

<http://hl7.org/fhir/CodeSystem/document-format.ttl> a owl:Ontology ;
  owl:imports fhir:fhir.ttl ;
  owl:versionIRI <http://build.fhir.org/CodeSystem/document-format.ttl> .