Cqgc Implementation Guide
0.1.0 - CI Build
Cqgc Implementation Guide - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions
| Official URL: http://fhir.cqgc.ferlab.bio/ValueSet/data-type | Version: 0.1.0 | |||
| Active as of 2025-08-25 | Computable Name: data-type | |||
Data types
References
This value set is not used here; it may be used elsewhere (e.g. specifications and/or implementations that use this content)
http://fhir.cqgc.ferlab.bio/CodeSystem/data-type
Expansion performed internally based on codesystem Data types v0.1.0 (CodeSystem)
This value set contains 40 concepts
| Code | System | Display |
| ALIR | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Aligned Reads |
| ALIRPG | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Aligned Reads from Variants Non-Repetitive Regions Report |
| SNV | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Germline SNV |
| SSNV | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Somatic SNV |
| SNVPG | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Germline SNV from Variants Non-Repetitive Regions Report |
| GCNV | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Germline CNV |
| SCNV | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Somatic CNV |
| GSV | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Germline SV |
| SSV | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Somatic SV |
| SOMFU | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Somatic Fusion Dragen VCF |
| SSUP | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Sequencing Data Supplement |
| IGV | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | IGV Track |
| CNVVIS | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | CNV Visualization |
| EXP | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Expression PNG |
| COVGENE | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Coverage by Gene Report |
| QCRUN | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Sequencing Run QC Report |
| EXOMISER | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Exomiser SNV Report |
| EXOMISER_CNV | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Exomiser CNV Report |
| PFUSION | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Preliminary Fusion TSV |
| RNASEQ | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | RNA Sequences |
| SRNASEQFCP | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Somatic RNA Sequences Fusion Candidate Preliminary |
| SRNASEQFCF | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Somatic RNA Sequences Fusion Candidate Final |
| SGENEXPSF | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Somatic Gene Expression SF |
| FFUSION | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Final Fusion |
| MDALL | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Leukemia Classification by the MD-ALL Algorithm |
| KMBCOR | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Somatic Targeted Analysis by the KM Algorithm |
| KMFLT3 | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Somatic Targeted Analysis by the KM Algorithm |
| KMUBTF | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Somatic Targeted Analysis by the KM Algorithm |
| KMNPM1 | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Somatic Targeted Analysis by the KM Algorithm |
| INDX | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Sequencing Data Index |
| OTHER | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Undefined Data Type |
| FUSG | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Gene fusion |
| HLA | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | HLA Caller Results |
| PAC | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Paralog Calling |
| PEC | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Ploidy Estimation per Chromosome |
| ROH | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Runs of Homozygosity |
| STR | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Tandem Repeat Calls |
| NORM_VEPPG | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Annotated Variants from Non-Repetitive Regions (Legacy Batch) VCF File |
| NRRV | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Annotated Variants from Non-Repetitive Regions Report |
| PHENOVAR | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Phenovar Detailed Results |
Explanation of the columns that may appear on this page:
| Level | A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies |
| System | The source of the definition of the code (when the value set draws in codes defined elsewhere) |
| Code | The code (used as the code in the resource instance) |
| Display | The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application |
| Definition | An explanation of the meaning of the concept |
| Comments | Additional notes about how to use the code |