Cqgc Implementation Guide
0.1.0 - CI Build

Cqgc Implementation Guide - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

ValueSet: Ferlab.bio ValueSet/data-type

Official URL: http://fhir.cqgc.ferlab.bio/ValueSet/data-type Version: 0.1.0
Active as of 2025-08-01 Computable Name: data-type

Data types

References

This value set is not used here; it may be used elsewhere (e.g. specifications and/or implementations that use this content)

Logical Definition (CLD)

 

Expansion

Expansion performed internally based on codesystem Data types v0.1.0 (CodeSystem)

This value set contains 35 concepts

CodeSystemDisplay (en-US)
  ALIRhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeAligned Reads
  SNVhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeGermline SNV
  SSNVhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeSomatic SNV
  GCNVhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeGermline CNV
  SCNVhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeSomatic CNV
  GSVhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeGermline SV
  SSVhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeSomatic SV
  SOMFUhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeSomatic Fusion Dragen VCF
  SSUPhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeSequencing Data Supplement
  IGVhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeIGV Track
  CNVVIShttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeCNV Visualization
  EXPhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeExpression PNG
  COVGENEhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeCoverage by Gene Report
  QCRUNhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeSequencing Run QC Report
  EXOMISERhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeExomiser SNV Report
  EXOMISER_CNVhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeExomiser CNV Report
  PFUSIONhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typePreliminary Fusion TSV
  RNASEQhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeRNA Sequences
  SRNASEQFCPhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeSomatic RNA Sequences Fusion Candidate Preliminary
  SRNASEQFCFhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeSomatic RNA Sequences Fusion Candidate Final
  SGENEXPSFhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeSomatic Gene Expression SF
  FFUSIONhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeFinal Fusion
  MDALLhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeLeukemia Classification by the MD-ALL Algorithm
  KMBCORhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeSomatic Targeted Analysis by the KM Algorithm
  KMFLT3http://fhir.cqgc.ferlab.bio/CodeSystem/data-typeSomatic Targeted Analysis by the KM Algorithm
  KMUBTFhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeSomatic Targeted Analysis by the KM Algorithm
  KMNPM1http://fhir.cqgc.ferlab.bio/CodeSystem/data-typeSomatic Targeted Analysis by the KM Algorithm
  INDXhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeSequencing Data Index
  OTHERhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeUndefined Data Type
  FUSGhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeGene fusion
  HLAhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeHLA Caller Results
  PAChttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeParalog Calling
  PEChttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typePloidy Estimation per Chromosome
  ROHhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeRuns of Homozygosity
  STRhttp://fhir.cqgc.ferlab.bio/CodeSystem/data-typeTandem Repeat Calls

Explanation of the columns that may appear on this page:

Level A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies
System The source of the definition of the code (when the value set draws in codes defined elsewhere)
Code The code (used as the code in the resource instance)
Display The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application
Definition An explanation of the meaning of the concept
Comments Additional notes about how to use the code