Cqgc Implementation Guide
0.1.0 - CI Build
Cqgc Implementation Guide - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions
Official URL: http://fhir.cqgc.ferlab.bio/ValueSet/data-type | Version: 0.1.0 | |||
Active as of 2025-08-01 | Computable Name: data-type |
Data types
References
This value set is not used here; it may be used elsewhere (e.g. specifications and/or implementations that use this content)
http://fhir.cqgc.ferlab.bio/CodeSystem/data-type
Expansion performed internally based on codesystem Data types v0.1.0 (CodeSystem)
This value set contains 35 concepts
Code | System | Display (en-US) |
ALIR | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Aligned Reads |
SNV | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Germline SNV |
SSNV | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Somatic SNV |
GCNV | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Germline CNV |
SCNV | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Somatic CNV |
GSV | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Germline SV |
SSV | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Somatic SV |
SOMFU | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Somatic Fusion Dragen VCF |
SSUP | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Sequencing Data Supplement |
IGV | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | IGV Track |
CNVVIS | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | CNV Visualization |
EXP | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Expression PNG |
COVGENE | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Coverage by Gene Report |
QCRUN | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Sequencing Run QC Report |
EXOMISER | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Exomiser SNV Report |
EXOMISER_CNV | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Exomiser CNV Report |
PFUSION | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Preliminary Fusion TSV |
RNASEQ | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | RNA Sequences |
SRNASEQFCP | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Somatic RNA Sequences Fusion Candidate Preliminary |
SRNASEQFCF | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Somatic RNA Sequences Fusion Candidate Final |
SGENEXPSF | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Somatic Gene Expression SF |
FFUSION | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Final Fusion |
MDALL | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Leukemia Classification by the MD-ALL Algorithm |
KMBCOR | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Somatic Targeted Analysis by the KM Algorithm |
KMFLT3 | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Somatic Targeted Analysis by the KM Algorithm |
KMUBTF | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Somatic Targeted Analysis by the KM Algorithm |
KMNPM1 | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Somatic Targeted Analysis by the KM Algorithm |
INDX | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Sequencing Data Index |
OTHER | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Undefined Data Type |
FUSG | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Gene fusion |
HLA | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | HLA Caller Results |
PAC | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Paralog Calling |
PEC | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Ploidy Estimation per Chromosome |
ROH | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Runs of Homozygosity |
STR | http://fhir.cqgc.ferlab.bio/CodeSystem/data-type | Tandem Repeat Calls |
Explanation of the columns that may appear on this page:
Level | A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies |
System | The source of the definition of the code (when the value set draws in codes defined elsewhere) |
Code | The code (used as the code in the resource instance) |
Display | The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application |
Definition | An explanation of the meaning of the concept |
Comments | Additional notes about how to use the code |