Cqgc Implementation Guide
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Extension: Ferlab.bio StructureDefinition/workflow

Official URL: http://fhir.cqgc.ferlab.bio/StructureDefinition/workflow Version: 0.1.0
Active as of 2025-08-01 Computable Name: Workflow

Context of Use

This extension may be used on the following element(s):

  • Element ID Task

Usage info

Usages:

You can also check for usages in the FHIR IG Statistics

Formal Views of Extension Content

Description of Profiles, Differentials, Snapshots, and how the XML and JSON presentations work.

This structure is derived from Extension

Summary

Complex Extension:

  • workflowName: string: Workflow name
  • workflowVersion: string: Workflow version
  • genomeBuild: Coding: Genome build
  • genomeBuildVersion: string: Genome Build Version
  • vepVersion: string: Vep Version

This structure is derived from Extension

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Extension 0..* Extension Workflow Extension
... Slices for extension Content/Rules for all slices
.... extension:workflowName S 0..1 Extension Workflow name
..... url 1..1 uri "workflowName"
..... valueString 1..1 string Value of extension
.... extension:workflowVersion S 0..1 Extension Workflow version
..... url 1..1 uri "workflowVersion"
..... valueString 1..1 string Value of extension
.... extension:genomeBuild 0..1 Extension Genome build
..... url 1..1 uri "genomeBuild"
..... valueCoding 1..1 Coding Value of extension
Binding: Genome build (required): Genome build
.... extension:genomeBuildVersion S 0..1 Extension Genome Build Version
..... url 1..1 uri "genomeBuildVersion"
..... valueString 1..1 string Value of extension
.... extension:vepVersion S 0..1 Extension VEP Version
..... url 1..1 uri "gencodeVersion"
..... valueString 1..1 string Value of extension
... url 1..1 uri "http://fhir.cqgc.ferlab.bio/StructureDefinition/workflow"
... value[x] 0..0

doco Documentation for this format
NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Extension 0..* Extension Workflow Extension
... id 0..1 string Unique id for inter-element referencing
... Slices for extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
.... extension:workflowName S 0..1 Extension Workflow name
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
..... url 1..1 uri "workflowName"
..... Slices for value[x] 1..1 string Value of extension
Slice: Unordered, Closed by type:$this
...... value[x]:valueString 1..1 string Value of extension
.... extension:workflowVersion S 0..1 Extension Workflow version
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
..... url 1..1 uri "workflowVersion"
..... Slices for value[x] 1..1 string Value of extension
Slice: Unordered, Closed by type:$this
...... value[x]:valueString 1..1 string Value of extension
.... extension:genomeBuild 0..1 Extension Genome build
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
..... url 1..1 uri "genomeBuild"
..... Slices for value[x] 1..1 Coding Value of extension
Slice: Unordered, Closed by type:$this
...... value[x]:valueCoding 1..1 Coding Value of extension
Binding: Genome build (required): Genome build
.... extension:genomeBuildVersion S 0..1 Extension Genome Build Version
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
..... url 1..1 uri "genomeBuildVersion"
..... Slices for value[x] 1..1 string Value of extension
Slice: Unordered, Closed by type:$this
...... value[x]:valueString 1..1 string Value of extension
.... extension:vepVersion S 0..1 Extension VEP Version
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
..... url 1..1 uri "gencodeVersion"
..... Slices for value[x] 1..1 string Value of extension
Slice: Unordered, Closed by type:$this
...... value[x]:valueString 1..1 string Value of extension
... url 1..1 uri "http://fhir.cqgc.ferlab.bio/StructureDefinition/workflow"

doco Documentation for this format

This structure is derived from Extension

Summary

Complex Extension:

  • workflowName: string: Workflow name
  • workflowVersion: string: Workflow version
  • genomeBuild: Coding: Genome build
  • genomeBuildVersion: string: Genome Build Version
  • vepVersion: string: Vep Version

Differential View

This structure is derived from Extension

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Extension 0..* Extension Workflow Extension
... Slices for extension Content/Rules for all slices
.... extension:workflowName S 0..1 Extension Workflow name
..... url 1..1 uri "workflowName"
..... valueString 1..1 string Value of extension
.... extension:workflowVersion S 0..1 Extension Workflow version
..... url 1..1 uri "workflowVersion"
..... valueString 1..1 string Value of extension
.... extension:genomeBuild 0..1 Extension Genome build
..... url 1..1 uri "genomeBuild"
..... valueCoding 1..1 Coding Value of extension
Binding: Genome build (required): Genome build
.... extension:genomeBuildVersion S 0..1 Extension Genome Build Version
..... url 1..1 uri "genomeBuildVersion"
..... valueString 1..1 string Value of extension
.... extension:vepVersion S 0..1 Extension VEP Version
..... url 1..1 uri "gencodeVersion"
..... valueString 1..1 string Value of extension
... url 1..1 uri "http://fhir.cqgc.ferlab.bio/StructureDefinition/workflow"
... value[x] 0..0

doco Documentation for this format

Snapshot View

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Extension 0..* Extension Workflow Extension
... id 0..1 string Unique id for inter-element referencing
... Slices for extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
.... extension:workflowName S 0..1 Extension Workflow name
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
..... url 1..1 uri "workflowName"
..... Slices for value[x] 1..1 string Value of extension
Slice: Unordered, Closed by type:$this
...... value[x]:valueString 1..1 string Value of extension
.... extension:workflowVersion S 0..1 Extension Workflow version
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
..... url 1..1 uri "workflowVersion"
..... Slices for value[x] 1..1 string Value of extension
Slice: Unordered, Closed by type:$this
...... value[x]:valueString 1..1 string Value of extension
.... extension:genomeBuild 0..1 Extension Genome build
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
..... url 1..1 uri "genomeBuild"
..... Slices for value[x] 1..1 Coding Value of extension
Slice: Unordered, Closed by type:$this
...... value[x]:valueCoding 1..1 Coding Value of extension
Binding: Genome build (required): Genome build
.... extension:genomeBuildVersion S 0..1 Extension Genome Build Version
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
..... url 1..1 uri "genomeBuildVersion"
..... Slices for value[x] 1..1 string Value of extension
Slice: Unordered, Closed by type:$this
...... value[x]:valueString 1..1 string Value of extension
.... extension:vepVersion S 0..1 Extension VEP Version
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
..... url 1..1 uri "gencodeVersion"
..... Slices for value[x] 1..1 string Value of extension
Slice: Unordered, Closed by type:$this
...... value[x]:valueString 1..1 string Value of extension
... url 1..1 uri "http://fhir.cqgc.ferlab.bio/StructureDefinition/workflow"

doco Documentation for this format

 

Other representations of profile: CSV, Excel, Schematron

Terminology Bindings

PathConformanceValueSetURI
Extension.extension:genomeBuild.value[x]:valueCodingrequiredgenome-build(a valid code from Genome build)
http://fhir.cqgc.ferlab.bio/ValueSet/genome-build
From this IG

Constraints

IdGradePath(s)DetailsRequirements
ele-1error**ALL** elementsAll FHIR elements must have a @value or children
: hasValue() or (children().count() > id.count())
ext-1error**ALL** extensionsMust have either extensions or value[x], not both
: extension.exists() != value.exists()